G2C::Electrophysiology

NSF knock-out mouse

S.G.N. Grant and the G2C Consortium

Corresponding email: Seth.Grant@ed.ac.uk  

 

Overview: Effect sizes (Cohen d) for 18 electrophysiology variables

Mutant slices showed little overall electrophysiological difference from wildtype slices. With heterozygous genotype and only one electrophysiological variable significantly affected in mutant slices, this mutation was deemed haplosufficient. Note that in the theta burst analysis, the tenth burst is analysed as representative of individual burst amplitude.

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The G2CMine data warehouse provides slice group summaries and individual mouse observations from the NSF knock-out line phenotyping.

 

Variables shown are: Max fEPSP amplitude, Maximum field excitatory postsynaptic potential (fEPSP) amplitude. PPF at 50ms, ampl ratio, Paired pulse facilitation (PPF), pulses separated by 50ms, amplitude ratio. Burst 1, PPF at 10ms, ampl ratio, Paired pulse facilitation (PPF), pulses separated by 10ms, amplitude ratio, observed during first two pulses of the first 100Hz burst during theta-burst stimulation. Burst 1, EPSP3 depr, ampl ratio, Depression observed in third fEPSP relative to the second fEPSP of the first 100Hz burst, amplitude ratio. Burst 1, ave amplitude, Average amplitude of four fEPSPs in first burst. Burst 2, ave amplitude, Average amplitude of four fEPSPs in second burst. Burst 3, ave amplitude, Average amplitude of four fEPSPs in third burst. Burst 4, ave amplitude, Average amplitude of four fEPSPs in fourth burst. Burst 5, ave amplitude, Average amplitude of four fEPSPs in fifth burst. Burst 6, ave amplitude, Average amplitude of four fEPSPs in sixth burst. Burst 7, ave amplitude, Average amplitude of four fEPSPs in seventh burst. Burst 8, ave amplitude, Average amplitude of four fEPSPs in eighth burst. Burst 9, ave amplitude, Average amplitude of four fEPSPs in ninth burst. Burst 10, ave amplitude, Average amplitude of four fEPSPs in tenth burst. Burst 2-4 ave amplitude vs Burst 1, Facilitation observed in average amplitude of bursts 2-4, relative to average amplitude of burst 1. Burst 8-10 ave amplitude vs Burst 2-4, Depression observed in average amplitude of bursts 8-10, relative to average amplitude of bursts 2-4. LTP vs PTP, amplitude ratio, Reduction in potentiation from immediately after theta-burst stimulation to one hour later, fEPSP amplitude ratio. LTP based on amplitude, Long term potentiation, ratio of amplitudes of fEPSPs in test pathway and control pathway.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
Max fEPSP amplitude µV 17 (6) 3360 (150) 20 (6) 3260 (200) 0.36 0.74
PPF at 50ms, ampl ratio % 17 (6) 183.5 (6.5) 20 (6) 164.5 (4.2) 0.54 0.03 *
Burst 1, PPF at 10ms, ampl ratio % 17 (6) 206.7 (9.7) 19 (6) 192 (8.1) 0.6 0.25
Burst 1, EPSP3 depr, ampl ratio % 17 (6) 63.1 (3.1) 19 (6) 60.6 (2.9) 0.55 0.56
Burst 1, ave amplitude µV 17 (6) 1413 (61) 19 (6) 1330 (76) 0.52 0.41
Burst 2, ave amplitude µV 17 (6) 2140 (110) 19 (6) 1920 (190) 0.15 0.45
Burst 3, ave amplitude µV 17 (6) 2500 (140) 19 (6) 2170 (210) 0.22 0.29
Burst 4, ave amplitude µV 17 (6) 2610 (130) 19 (6) 2290 (200) 0.3 0.27
Burst 5, ave amplitude µV 17 (6) 2550 (110) 19 (6) 2280 (170) 0.28 0.28
Burst 6, ave amplitude µV 17 (6) 2455 (94) 19 (6) 2198 (158) 0.25 0.26
Burst 7, ave amplitude µV 17 (6) 2357 (86) 19 (6) 2116 (144) 0.26 0.24
Burst 8, ave amplitude µV 17 (6) 2262 (77) 18 (6) 2123 (136) 0.35 0.43
Burst 9, ave amplitude µV 17 (6) 2177 (71) 18 (6) 2043 (135) 0.43 0.42
Burst 10, ave amplitude µV 17 (6) 2120 (70) 18 (6) 1999 (137) 0.42 0.47
Burst 2-4 ave amplitude vs Burst 1 % 17 (6) 171.3 (4.8) 19 (6) 159.1 (5.6) 0.18 0.2
Burst 8-10 ave amplitude vs Burst 2-4 % 17 (6) 91.7 (1.9) 18 (6) 93.9 (2.1) 0.17 0.53
LTP vs PTP, amplitude ratio % 17 (6) 80.7 (2) 19 (6) 77 (1.9) 0.017 * 0.37
LTP based on amplitude % 17 (6) 174.6 (6.3) 19 (6) 173.1 (5.2) 0.99 0.75

 

Basal Synaptic Transmission

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Variables shown are: Max fEPSP amplitude, Maximum field excitatory postsynaptic potential (fEPSP) amplitude.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
Max fEPSP amplitude µV 17 (6) 3360 (150) 20 (6) 3260 (200) 0.36 0.74

 

Paired Pulse Facilitation

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Variables shown are: PPF at 50ms, ampl ratio, Paired pulse facilitation (PPF), pulses separated by 50ms, amplitude ratio.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
PPF at 50ms, ampl ratio % 17 (6) 183.5 (6.5) 20 (6) 164.5 (4.2) 0.54 0.03 *

 

Theta Burst Stimulation

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Variables shown are: Burst 1, PPF at 10ms, ampl ratio, Paired pulse facilitation (PPF), pulses separated by 10ms, amplitude ratio, observed during first two pulses of the first 100Hz burst during theta-burst stimulation. Burst 1, EPSP3 depr, ampl ratio, Depression observed in third fEPSP relative to the second fEPSP of the first 100Hz burst, amplitude ratio. Burst 1, ave amplitude, Average amplitude of four fEPSPs in first burst. Burst 2, ave amplitude, Average amplitude of four fEPSPs in second burst. Burst 3, ave amplitude, Average amplitude of four fEPSPs in third burst. Burst 4, ave amplitude, Average amplitude of four fEPSPs in fourth burst. Burst 5, ave amplitude, Average amplitude of four fEPSPs in fifth burst. Burst 6, ave amplitude, Average amplitude of four fEPSPs in sixth burst. Burst 7, ave amplitude, Average amplitude of four fEPSPs in seventh burst. Burst 8, ave amplitude, Average amplitude of four fEPSPs in eighth burst. Burst 9, ave amplitude, Average amplitude of four fEPSPs in ninth burst. Burst 10, ave amplitude, Average amplitude of four fEPSPs in tenth burst. Burst 2-4 ave amplitude vs Burst 1, Facilitation observed in average amplitude of bursts 2-4, relative to average amplitude of burst 1. Burst 8-10 ave amplitude vs Burst 2-4, Depression observed in average amplitude of bursts 8-10, relative to average amplitude of bursts 2-4.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
Burst 1, PPF at 10ms, ampl ratio % 17 (6) 206.7 (9.7) 19 (6) 192 (8.1) 0.6 0.25
Burst 1, EPSP3 depr, ampl ratio % 17 (6) 63.1 (3.1) 19 (6) 60.6 (2.9) 0.55 0.56
Burst 1, ave amplitude µV 17 (6) 1413 (61) 19 (6) 1330 (76) 0.52 0.41
Burst 2, ave amplitude µV 17 (6) 2140 (110) 19 (6) 1920 (190) 0.15 0.45
Burst 3, ave amplitude µV 17 (6) 2500 (140) 19 (6) 2170 (210) 0.22 0.29
Burst 4, ave amplitude µV 17 (6) 2610 (130) 19 (6) 2290 (200) 0.3 0.27
Burst 5, ave amplitude µV 17 (6) 2550 (110) 19 (6) 2280 (170) 0.28 0.28
Burst 6, ave amplitude µV 17 (6) 2455 (94) 19 (6) 2198 (158) 0.25 0.26
Burst 7, ave amplitude µV 17 (6) 2357 (86) 19 (6) 2116 (144) 0.26 0.24
Burst 8, ave amplitude µV 17 (6) 2262 (77) 18 (6) 2123 (136) 0.35 0.43
Burst 9, ave amplitude µV 17 (6) 2177 (71) 18 (6) 2043 (135) 0.43 0.42
Burst 10, ave amplitude µV 17 (6) 2120 (70) 18 (6) 1999 (137) 0.42 0.47
Burst 2-4 ave amplitude vs Burst 1 % 17 (6) 171.3 (4.8) 19 (6) 159.1 (5.6) 0.18 0.2
Burst 8-10 ave amplitude vs Burst 2-4 % 17 (6) 91.7 (1.9) 18 (6) 93.9 (2.1) 0.17 0.53

 

Long Term Potentiation

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Variables shown are: LTP vs PTP, amplitude ratio, Reduction in potentiation from immediately after theta-burst stimulation to one hour later, fEPSP amplitude ratio. LTP based on amplitude, Long term potentiation, ratio of amplitudes of fEPSPs in test pathway and control pathway.

 

Variable Units Wildtype slices (animals) Wildtype mean (SEM) Mutant slices (animals) Mutant mean (SEM) P(animals) P(mutation)
LTP vs PTP, amplitude ratio % 17 (6) 80.7 (2) 19 (6) 77 (1.9) 0.017 * 0.37
LTP based on amplitude % 17 (6) 174.6 (6.3) 19 (6) 173.1 (5.2) 0.99 0.75

Hippocampal brain slices summarised by genotype, followed by a list of the animals from which they were prepared.

View experimental protocols.

 

Hippocampal Slice Electrophysiology Cohort Summary

GenotypeCount
WT7
mutant7

 

Individual Mice

Mouse IDGenotype
wA87c275687WT
wA8122e6be2WT
wAea6b3da48WT
wA81aa284a6WT
wA521460f47WT
wA999f14024WT
wA325015a90WT
mB521460f47mutant
mB81aa284a6mutant
mBea6b3da48mutant
mB87c275687mutant
mBeca2364fdmutant
mAeca2364fdmutant
mB8122e6be2mutant

Field EPSP (Maximum)

Mouse IDGenotypeSlice NumberRecording ChannelFile Name
mAeca2364fd mutant 1 46A eca2364fd_slices_1-x-2-3.zip
mAeca2364fd mutant 2 46B eca2364fd_slices_1-x-2-3.zip
mAeca2364fd mutant 3 61B eca2364fd_slices_1-x-2-3.zip
mBeca2364fd mutant 4 15A Not available
mBeca2364fd mutant 5 62A Not available
mBeca2364fd mutant 6 46B Not available
mB8122e6be2 mutant 3 55A 8122e6be2_slices_3-4-5-x.zip
mB8122e6be2 mutant 4 43A 8122e6be2_slices_3-4-5-x.zip
mB8122e6be2 mutant 5 15B 8122e6be2_slices_3-4-5-x.zip
mB87c275687 mutant 5 46A 87c275687_slices_5-6-7-x.zip
mB87c275687 mutant 6 52A 87c275687_slices_5-6-7-x.zip
mB87c275687 mutant 7 12B 87c275687_slices_5-6-7-x.zip
mBea6b3da48 mutant 4 42A ea6b3da48_slices_x-4-5-x.zip
mBea6b3da48 mutant 5 15B ea6b3da48_slices_x-4-5-x.zip
mB521460f47 mutant 2 41A 521460f47_slices_1-2-3-x.zip
mB521460f47 mutant 4 38A 521460f47_slices_4-5-6-7.zip
mB521460f47 mutant 5 52A 521460f47_slices_4-5-6-7.zip
mB521460f47 mutant 6 12B 521460f47_slices_4-5-6-7.zip
mB521460f47 mutant 7 52B 521460f47_slices_4-5-6-7.zip
mB81aa284a6 mutant 2 12A 81aa284a6_slices_2-3-4-5.zip
mB81aa284a6 mutant 3 41A 81aa284a6_slices_2-3-4-5.zip
mB81aa284a6 mutant 4 12B 81aa284a6_slices_2-3-4-5.zip
mB81aa284a6 mutant 5 54B 81aa284a6_slices_2-3-4-5.zip
wA325015a90 WT 1 46A 325015a90_slice_1-2-x-x.zip
wA325015a90 WT 2 52A 325015a90_slice_1-2-x-x.zip
wA325015a90 WT 3 55A 325015a90_slice_3-x-x-x.zip
wA8122e6be2 WT 1 52A 8122e6be2_slices_x-1-2-x.zip
wA8122e6be2 WT 2 38B 8122e6be2_slices_x-1-2-x.zip
wA87c275687 WT 1 46A 87c275687_slices_1-2-3-4.zip
wA87c275687 WT 2 61A 87c275687_slices_1-2-3-4.zip
wA87c275687 WT 3 46B 87c275687_slices_1-2-3-4.zip
wAea6b3da48 WT 1 12A ea6b3da48_slices_1-2-3-x.zip
wAea6b3da48 WT 2 52A ea6b3da48_slices_1-2-3-x.zip
wAea6b3da48 WT 3 46B ea6b3da48_slices_1-2-3-x.zip
wA999f14024 WT 1 46A 999f14024_slices_1-2-x-3.zip
wA999f14024 WT 2 52A 999f14024_slices_1-2-x-3.zip
wA999f14024 WT 3 62B 999f14024_slices_1-2-x-3.zip
wA999f14024 WT 4 62A 999f14024_slice_x-4-x-x.zip
wA521460f47 WT 1 46A 521460f47_slices_1-2-3-x.zip
wA521460f47 WT 3 38B 521460f47_slices_1-2-3-x.zip
wA81aa284a6 WT 1 46A 81aa284a6_slices_1-only.zip

Paired Pulse Facilitation

Mouse IDGenotypeSlice NumberRecording ChannelFile Name
mAeca2364fd mutant 1 46A eca2364fd_slices_1-x-2-3.zip
mAeca2364fd mutant 2 46B eca2364fd_slices_1-x-2-3.zip
mAeca2364fd mutant 3 61B eca2364fd_slices_1-x-2-3.zip
mBeca2364fd mutant 4 15A Not available
mBeca2364fd mutant 5 62A Not available
mBeca2364fd mutant 6 46B Not available
mB8122e6be2 mutant 3 55A 8122e6be2_slices_3-4-5-x.zip
mB8122e6be2 mutant 4 43A 8122e6be2_slices_3-4-5-x.zip
mB8122e6be2 mutant 5 15B 8122e6be2_slices_3-4-5-x.zip
mB87c275687 mutant 5 46A 87c275687_slices_5-6-7-x.zip
mB87c275687 mutant 6 52A 87c275687_slices_5-6-7-x.zip
mB87c275687 mutant 7 12B 87c275687_slices_5-6-7-x.zip
mBea6b3da48 mutant 4 42A ea6b3da48_slices_x-4-5-x.zip
mBea6b3da48 mutant 5 15B ea6b3da48_slices_x-4-5-x.zip
mB521460f47 mutant 2 41A 521460f47_slices_1-2-3-x.zip
mB521460f47 mutant 4 38A 521460f47_slices_4-5-6-7.zip
mB521460f47 mutant 5 52A 521460f47_slices_4-5-6-7.zip
mB521460f47 mutant 6 12B 521460f47_slices_4-5-6-7.zip
mB521460f47 mutant 7 52B 521460f47_slices_4-5-6-7.zip
mB81aa284a6 mutant 2 12A 81aa284a6_slices_2-3-4-5.zip
mB81aa284a6 mutant 3 41A 81aa284a6_slices_2-3-4-5.zip
mB81aa284a6 mutant 4 12B 81aa284a6_slices_2-3-4-5.zip
mB81aa284a6 mutant 5 54B 81aa284a6_slices_2-3-4-5.zip
wA325015a90 WT 1 46A 325015a90_slice_1-2-x-x.zip
wA325015a90 WT 2 52A 325015a90_slice_1-2-x-x.zip
wA325015a90 WT 3 55A 325015a90_slice_3-x-x-x.zip
wA8122e6be2 WT 1 52A 8122e6be2_slices_x-1-2-x.zip
wA8122e6be2 WT 2 38B 8122e6be2_slices_x-1-2-x.zip
wA87c275687 WT 1 46A 87c275687_slices_1-2-3-4.zip
wA87c275687 WT 2 61A 87c275687_slices_1-2-3-4.zip
wA87c275687 WT 3 46B 87c275687_slices_1-2-3-4.zip
wAea6b3da48 WT 1 12A ea6b3da48_slices_1-2-3-x.zip
wAea6b3da48 WT 2 52A ea6b3da48_slices_1-2-3-x.zip
wAea6b3da48 WT 3 46B ea6b3da48_slices_1-2-3-x.zip
wA999f14024 WT 1 46A 999f14024_slices_1-2-x-3.zip
wA999f14024 WT 2 52A 999f14024_slices_1-2-x-3.zip
wA999f14024 WT 3 62B 999f14024_slices_1-2-x-3.zip
wA999f14024 WT 4 62A 999f14024_slice_x-4-x-x.zip
wA521460f47 WT 1 46A 521460f47_slices_1-2-3-x.zip
wA521460f47 WT 3 38B 521460f47_slices_1-2-3-x.zip
wA81aa284a6 WT 1 46A 81aa284a6_slices_1-only.zip

Long Term Potentiation

Mouse IDGenotypeSlice NumberRecording ChannelFile Name
mAeca2364fd mutant 1 46A eca2364fd_slices_1-x-2-3.zip
mAeca2364fd mutant 2 46B eca2364fd_slices_1-x-2-3.zip
mAeca2364fd mutant 3 61B eca2364fd_slices_1-x-2-3.zip
mBeca2364fd mutant 4 15A Not available
mBeca2364fd mutant 5 62A Not available
mBeca2364fd mutant 6 46B Not available
mB8122e6be2 mutant 3 55A 8122e6be2_slices_3-4-5-x.zip
mB8122e6be2 mutant 4 43A 8122e6be2_slices_3-4-5-x.zip
mB8122e6be2 mutant 5 15B 8122e6be2_slices_3-4-5-x.zip
mB87c275687 mutant 5 46A 87c275687_slices_5-6-7-x.zip
mB87c275687 mutant 6 52A 87c275687_slices_5-6-7-x.zip
mBea6b3da48 mutant 4 42A ea6b3da48_slices_x-4-5-x.zip
mBea6b3da48 mutant 5 15B ea6b3da48_slices_x-4-5-x.zip
mB521460f47 mutant 2 41A 521460f47_slices_1-2-3-x.zip
mB521460f47 mutant 4 38A 521460f47_slices_4-5-6-7.zip
mB521460f47 mutant 5 52A 521460f47_slices_4-5-6-7.zip
mB521460f47 mutant 6 12B 521460f47_slices_4-5-6-7.zip
mB521460f47 mutant 7 52B 521460f47_slices_4-5-6-7.zip
mB81aa284a6 mutant 2 12A 81aa284a6_slices_2-3-4-5.zip
mB81aa284a6 mutant 3 41A 81aa284a6_slices_2-3-4-5.zip
mB81aa284a6 mutant 4 12B 81aa284a6_slices_2-3-4-5.zip
mB81aa284a6 mutant 5 54B 81aa284a6_slices_2-3-4-5.zip
wA325015a90 WT 1 46A 325015a90_slice_1-2-x-x.zip
wA325015a90 WT 2 52A 325015a90_slice_1-2-x-x.zip
wA325015a90 WT 3 55A 325015a90_slice_3-x-x-x.zip
wA8122e6be2 WT 1 52A 8122e6be2_slices_x-1-2-x.zip
wA8122e6be2 WT 2 38B 8122e6be2_slices_x-1-2-x.zip
wA87c275687 WT 1 46A 87c275687_slices_1-2-3-4.zip
wA87c275687 WT 2 61A 87c275687_slices_1-2-3-4.zip
wA87c275687 WT 3 46B 87c275687_slices_1-2-3-4.zip
wAea6b3da48 WT 1 12A ea6b3da48_slices_1-2-3-x.zip
wAea6b3da48 WT 2 52A ea6b3da48_slices_1-2-3-x.zip
wAea6b3da48 WT 3 46B ea6b3da48_slices_1-2-3-x.zip
wA999f14024 WT 1 46A 999f14024_slices_1-2-x-3.zip
wA999f14024 WT 2 52A 999f14024_slices_1-2-x-3.zip
wA999f14024 WT 3 62B 999f14024_slices_1-2-x-3.zip
wA999f14024 WT 4 62A 999f14024_slice_x-4-x-x.zip
wA521460f47 WT 1 46A 521460f47_slices_1-2-3-x.zip
wA521460f47 WT 3 38B 521460f47_slices_1-2-3-x.zip
wA81aa284a6 WT 1 46A*TWO FILES 81aa284a6_slices_1-only.zip

Data Files

File NameSizeChecksum (SHA256)
81aa284a6_slices_1-only.zip53879018e032be9b7074587e6628c7edd218cd99e6041ded6fa2c9e2797bd3ba8e59180b
325015a90_slice_1-2-x-x.zip3964866126105c8b5983fccc723d3b071167b0916a7c2f2d5bdc391cda598273f734c554
999f14024_slice_x-4-x-x.zip56858225cee54cc58817fedf75a2e9413865e865d322328654ced153aa1d035aed11603b
8122e6be2_slices_3-4-5-x.zip43591315c0d5f88375ba90d1c04e26188e1aa9165f259bdf5e8394d79bbddb3a412c66a9
ea6b3da48_slices_x-4-5-x.zip421889625d6a64b4dc4201b4fa46e10cea8e1350b8710bbb709c88a74bdc3266ef922c52
999f14024_slices_1-2-x-3.zip4037533676cda242ab0b23b04aa970768d9b68b16d77fbc5d464e40c30cc14ae06b504b1
81aa284a6_slices_2-3-4-5.zip464805731cc45e61daddf26d4839502dabce96c0cc214856c13c01af793684480df491da
87c275687_slices_1-2-3-4.zip45909640210f332098760911ffcaf9d1088c86025cbceb1f769acd6fa340c5e07ee95416
521460f47_slices_1-2-3-x.zip41396427fb9583d764a495249db4fb98e974803ec3b3198ecb8054049024bc7e6270f274
521460f47_slices_4-5-6-7.zip45140400ba89c513a303d712618f43311163bf995898aba38749b26321b0030962831993
eca2364fd_slices_1-x-2-3.zip515041274b5d0e65b8c75b4d1d625781528eea2b42b85353f374a9ccb76ab577f45cc19a
ea6b3da48_slices_1-2-3-x.zip473737007c805a63bda362dd2b8527c79a703e4f1133f16228da618c6a782a47a147298b
8122e6be2_slices_x-1-2-x.zip4641562816f6e3b82c0c1bba018c271c3b0b8c05973c9df7bb093de3724db19641438b1e
87c275687_slices_5-6-7-x.zip6320456736dfed280babeb2cee6a5f2533edb5123896f7c351f52cf5d85bbf5a33705528
325015a90_slice_3-x-x-x.zip42266357a845952c907970c0e62d6ff7c319bde4efcdcdb086236d8d833155e542a80ece
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EUROSPIN (FP7-HEALTH-241498), SynSys (FP7-HEALTH-242167) and GENCODYS (FP7-HEALTH-241995).

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