Automated design of genomic Southern blot probes
Mike DR Croning, David G Fricker, Noboru H Komiyama and Seth GN Grant
Design Case - ProbeDesign59 - back to list
Summary
./analyse_probe_search_results : Fri Sep 30 10:00:09 2005
Connected to host: host, as user: user Database : southern_blot_designs Fetched probe design: ProbeDesign59 assembly : NCBIM34 bias : 3prime chromosome : 10 id : 46 strand : 1 ------------- Design window length: 2501bp All jobs for probe design are successful - total: 35 Fetched conf : Exonerate mouse_NCBIM34 (id: 1) Genome file(s) at: /blastdb/Mouse/NCBIM34/softmasked_dusted Fetched 700 putative probes to analyse Selection criteria to rank probes: Minimum score ratio : 10 (i.e. self-hit must score at least 10 times higher than the next best hit) Maximum percent repetitive bases: 5 Favour probes to the 3prime end of design window ------------------------ Putative probes without hits : 0 Putative probes with single_self_hit : 700/700 Putative probes exceeding selection criteria: 290/700 PASSED (GREEN) AND FAILED PUTATIVE PROBES IN THE DESIGN WINDOW --------------------------------------------------------------
Image
Unique (yellow), passed (green) and failed putative probes in the design window
Unique putative probes
No probes
Putative probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
47504 | 900 | 27.8 | 4500 | - | 945 | 27.8 |
47542 | 850 | 26.2 | 4250 | - | 966 | 26.2 |
47543 | 850 | 26.2 | 4250 | - | 1008 | 26.2 |
47583 | 800 | 24.7 | 4000 | - | 960 | 24.7 |
47584 | 800 | 24.7 | 4000 | - | 1000 | 24.7 |
47585 | 800 | 24.7 | 4000 | - | 1040 | 24.7 |
47628 | 750 | 23.1 | 3750 | - | 962 | 23.1 |
47629 | 750 | 23.1 | 3750 | - | 999 | 23.1 |
47630 | 750 | 23.1 | 3750 | - | 1036 | 23.1 |
47631 | 750 | 23.1 | 3750 | - | 1073 | 23.1 |
47632 | 750 | 23.1 | 3750 | - | 1110 | 23.1 |
47677 | 700 | 21.6 | 3500 | - | 945 | 21.6 |
47678 | 700 | 21.6 | 3500 | - | 980 | 21.6 |
47679 | 700 | 21.6 | 3500 | - | 1015 | 21.6 |
47680 | 700 | 21.6 | 3500 | - | 1050 | 21.6 |
47681 | 700 | 21.6 | 3500 | - | 1085 | 21.6 |
47682 | 700 | 21.6 | 3500 | - | 1120 | 21.6 |
47683 | 700 | 21.6 | 3500 | - | 1155 | 21.6 |
47541 | 850 | 25.8 | 4250 | 2.1 | 924 | 21.5 |
47469 | 950 | 20.9 | 4750 | 0.2 | 940 | 20.5 |
47732 | 650 | 20.1 | 3250 | - | 960 | 20.1 |
47733 | 650 | 20.1 | 3250 | - | 992 | 20.1 |
47734 | 650 | 20.1 | 3250 | - | 1024 | 20.1 |
47735 | 650 | 20.1 | 3250 | - | 1056 | 20.1 |
47736 | 650 | 20.1 | 3250 | - | 1088 | 20.1 |
47737 | 650 | 20.1 | 3250 | - | 1120 | 20.1 |
47738 | 650 | 20.1 | 3250 | - | 1152 | 20.1 |
47739 | 650 | 20.1 | 3250 | - | 1184 | 20.1 |
47293 | 1300 | 20.0 | 6500 | - | 975 | 20.0 |
47294 | 1300 | 20.0 | 6500 | - | 1040 | 20.0 |
47586 | 800 | 20.0 | 4000 | - | 1080 | 20.0 |
47295 | 1300 | 20.0 | 6500 | - | 1105 | 20.0 |
47296 | 1300 | 20.0 | 6500 | - | 1170 | 20.0 |
47505 | 900 | 19.8 | 4500 | - | 990 | 19.8 |
47313 | 1250 | 19.2 | 6250 | - | 992 | 19.2 |
47314 | 1250 | 19.2 | 6250 | - | 1054 | 19.2 |
47315 | 1250 | 19.2 | 6250 | - | 1116 | 19.2 |
47316 | 1250 | 19.2 | 6250 | - | 1178 | 19.2 |
47317 | 1250 | 19.2 | 6250 | - | 1240 | 19.2 |
47800 | 600 | 19.1 | 3000 | - | 1200 | 19.1 |
47627 | 750 | 23.1 | 3750 | 2.3 | 925 | 18.6 |
47792 | 600 | 18.5 | 3000 | - | 960 | 18.5 |
47793 | 600 | 18.5 | 3000 | - | 990 | 18.5 |
47794 | 600 | 18.5 | 3000 | - | 1020 | 18.5 |
47795 | 600 | 18.5 | 3000 | - | 1050 | 18.5 |
47796 | 600 | 18.5 | 3000 | - | 1080 | 18.5 |
47797 | 600 | 18.5 | 3000 | - | 1110 | 18.5 |
47798 | 600 | 18.5 | 3000 | - | 1140 | 18.5 |
47799 | 600 | 18.5 | 3000 | - | 1170 | 18.5 |
47334 | 1200 | 18.5 | 6000 | - | 960 | 18.5 |
47335 | 1200 | 18.5 | 6000 | - | 1020 | 18.5 |
47336 | 1200 | 18.5 | 6000 | - | 1080 | 18.5 |
47337 | 1200 | 18.5 | 6000 | - | 1140 | 18.5 |
47338 | 1200 | 18.5 | 6000 | - | 1200 | 18.5 |
47339 | 1200 | 18.5 | 6000 | - | 1260 | 18.5 |
47357 | 1150 | 17.7 | 5750 | - | 969 | 17.7 |
47358 | 1150 | 17.7 | 5750 | - | 1026 | 17.7 |
47359 | 1150 | 17.7 | 5750 | - | 1083 | 17.7 |
47360 | 1150 | 17.7 | 5750 | - | 1140 | 17.7 |
47361 | 1150 | 17.7 | 5750 | - | 1197 | 17.7 |
47362 | 1150 | 17.7 | 5750 | - | 1254 | 17.7 |
47363 | 1150 | 17.7 | 5750 | - | 1311 | 17.7 |
47759 | 650 | 17.7 | 3250 | - | 1824 | 17.7 |
47312 | 1250 | 19.2 | 6250 | 1.0 | 930 | 17.3 |
47859 | 550 | 17.0 | 2750 | - | 945 | 17.0 |
47860 | 550 | 17.0 | 2750 | - | 972 | 17.0 |
47861 | 550 | 17.0 | 2750 | - | 999 | 17.0 |
47862 | 550 | 17.0 | 2750 | - | 1026 | 17.0 |
47863 | 550 | 17.0 | 2750 | - | 1053 | 17.0 |
47864 | 550 | 17.0 | 2750 | - | 1080 | 17.0 |
47865 | 550 | 17.0 | 2750 | - | 1107 | 17.0 |
47866 | 550 | 17.0 | 2750 | - | 1134 | 17.0 |
47867 | 550 | 17.0 | 2750 | - | 1161 | 17.0 |
47868 | 550 | 17.0 | 2750 | - | 1188 | 17.0 |
47382 | 1100 | 16.9 | 5500 | - | 990 | 16.9 |
47383 | 1100 | 16.9 | 5500 | - | 1045 | 16.9 |
47384 | 1100 | 16.9 | 5500 | - | 1100 | 16.9 |
47385 | 1100 | 16.9 | 5500 | - | 1155 | 16.9 |
47386 | 1100 | 16.9 | 5500 | - | 1210 | 16.9 |
47387 | 1100 | 16.9 | 5500 | - | 1265 | 16.9 |
47388 | 1100 | 16.9 | 5500 | - | 1320 | 16.9 |
47389 | 1100 | 16.9 | 5500 | - | 1375 | 16.9 |
47821 | 600 | 16.3 | 3000 | - | 1830 | 16.3 |
47822 | 600 | 16.3 | 3000 | - | 1860 | 16.3 |
47823 | 600 | 16.3 | 3000 | - | 1890 | 16.3 |
47409 | 1050 | 16.2 | 5250 | - | 988 | 16.2 |
47410 | 1050 | 16.2 | 5250 | - | 1040 | 16.2 |
47411 | 1050 | 16.2 | 5250 | - | 1092 | 16.2 |
47412 | 1050 | 16.2 | 5250 | - | 1144 | 16.2 |
47413 | 1050 | 16.2 | 5250 | - | 1196 | 16.2 |
47414 | 1050 | 16.2 | 5250 | - | 1248 | 16.2 |
47415 | 1050 | 16.2 | 5250 | - | 1300 | 16.2 |
47416 | 1050 | 16.2 | 5250 | - | 1352 | 16.2 |
47417 | 1050 | 16.2 | 5250 | - | 1404 | 16.2 |
47582 | 800 | 21.6 | 4000 | 2.8 | 920 | 16.1 |
47945 | 500 | 15.9 | 2500 | - | 1200 | 15.9 |
47873 | 550 | 15.8 | 2750 | - | 1323 | 15.8 |
47731 | 650 | 20.1 | 3250 | 2.2 | 928 | 15.8 |
47381 | 1100 | 16.9 | 5500 | 0.6 | 935 | 15.7 |
47544 | 850 | 15.6 | 4250 | - | 1050 | 15.6 |
47935 | 500 | 15.4 | 2500 | - | 950 | 15.4 |
47936 | 500 | 15.4 | 2500 | - | 975 | 15.4 |
47937 | 500 | 15.4 | 2500 | - | 1000 | 15.4 |
47938 | 500 | 15.4 | 2500 | - | 1025 | 15.4 |
47939 | 500 | 15.4 | 2500 | - | 1050 | 15.4 |
47940 | 500 | 15.4 | 2500 | - | 1075 | 15.4 |
47941 | 500 | 15.4 | 2500 | - | 1100 | 15.4 |
47942 | 500 | 15.4 | 2500 | - | 1125 | 15.4 |
47943 | 500 | 15.4 | 2500 | - | 1150 | 15.4 |
47944 | 500 | 15.4 | 2500 | - | 1175 | 15.4 |
47684 | 700 | 15.4 | 3500 | - | 1190 | 15.4 |
47437 | 1000 | 15.4 | 5000 | - | 950 | 15.4 |
47438 | 1000 | 15.4 | 5000 | - | 1000 | 15.4 |
47439 | 1000 | 15.4 | 5000 | - | 1050 | 15.4 |
47440 | 1000 | 15.4 | 5000 | - | 1100 | 15.4 |
47441 | 1000 | 15.4 | 5000 | - | 1150 | 15.4 |
47442 | 1000 | 15.4 | 5000 | - | 1200 | 15.4 |
47443 | 1000 | 15.4 | 5000 | - | 1250 | 15.4 |
47444 | 1000 | 15.4 | 5000 | - | 1300 | 15.4 |
47445 | 1000 | 15.4 | 5000 | - | 1350 | 15.4 |
47446 | 1000 | 15.4 | 5000 | - | 1400 | 15.4 |
47447 | 1000 | 15.4 | 5000 | - | 1450 | 15.4 |
47448 | 1000 | 15.4 | 5000 | - | 1500 | 15.4 |
47292 | 1300 | 20.0 | 6500 | 2.5 | 910 | 15.1 |
47408 | 1050 | 16.2 | 5250 | 0.6 | 936 | 15.0 |
47892 | 550 | 14.9 | 2750 | - | 1836 | 14.9 |
47893 | 550 | 14.9 | 2750 | - | 1863 | 14.9 |
47894 | 550 | 14.9 | 2750 | - | 1890 | 14.9 |
47895 | 550 | 14.9 | 2750 | - | 1917 | 14.9 |
47470 | 950 | 14.6 | 4750 | - | 987 | 14.6 |
47471 | 950 | 14.6 | 4750 | - | 1034 | 14.6 |
47472 | 950 | 14.6 | 4750 | - | 1081 | 14.6 |
47473 | 950 | 14.6 | 4750 | - | 1128 | 14.6 |
47474 | 950 | 14.6 | 4750 | - | 1175 | 14.6 |
47475 | 950 | 14.6 | 4750 | - | 1222 | 14.6 |
47476 | 950 | 14.6 | 4750 | - | 1269 | 14.6 |
47477 | 950 | 14.6 | 4750 | - | 1316 | 14.6 |
47478 | 950 | 14.6 | 4750 | - | 1363 | 14.6 |
47479 | 950 | 14.6 | 4750 | - | 1410 | 14.6 |
47480 | 950 | 14.6 | 4750 | - | 1457 | 14.6 |
47481 | 950 | 14.6 | 4750 | - | 1504 | 14.6 |
47482 | 950 | 14.6 | 4750 | - | 1551 | 14.6 |
47896 | 550 | 14.6 | 2750 | - | 1944 | 14.6 |
47633 | 750 | 14.5 | 3750 | - | 1147 | 14.5 |
47791 | 600 | 18.5 | 3000 | 2.0 | 930 | 14.5 |
47952 | 500 | 14.0 | 2500 | - | 1375 | 14.0 |
47506 | 900 | 13.8 | 4500 | - | 1035 | 13.8 |
47507 | 900 | 13.8 | 4500 | - | 1080 | 13.8 |
47508 | 900 | 13.8 | 4500 | - | 1125 | 13.8 |
47509 | 900 | 13.8 | 4500 | - | 1170 | 13.8 |
47510 | 900 | 13.8 | 4500 | - | 1215 | 13.8 |
47511 | 900 | 13.8 | 4500 | - | 1260 | 13.8 |
47512 | 900 | 13.8 | 4500 | - | 1305 | 13.8 |
47513 | 900 | 13.8 | 4500 | - | 1350 | 13.8 |
47514 | 900 | 13.8 | 4500 | - | 1395 | 13.8 |
47515 | 900 | 13.8 | 4500 | - | 1440 | 13.8 |
47516 | 900 | 13.8 | 4500 | - | 1485 | 13.8 |
47517 | 900 | 13.8 | 4500 | - | 1530 | 13.8 |
47518 | 900 | 13.8 | 4500 | - | 1575 | 13.8 |
47970 | 500 | 13.6 | 2500 | - | 1825 | 13.6 |
47971 | 500 | 13.6 | 2500 | - | 1850 | 13.6 |
47972 | 500 | 13.6 | 2500 | - | 1875 | 13.6 |
47973 | 500 | 13.6 | 2500 | - | 1900 | 13.6 |
47974 | 500 | 13.6 | 2500 | - | 1925 | 13.6 |
47975 | 500 | 13.6 | 2500 | - | 1950 | 13.6 |
47976 | 500 | 13.6 | 2500 | - | 1975 | 13.6 |
47289 | 1300 | 20.0 | 6500 | 3.4 | 715 | 13.2 |
47290 | 1300 | 20.0 | 6500 | 3.4 | 780 | 13.2 |
47291 | 1300 | 20.0 | 6500 | 3.4 | 845 | 13.2 |
47803 | 600 | 13.2 | 3000 | - | 1290 | 13.2 |
47545 | 850 | 13.1 | 4250 | - | 1092 | 13.1 |
47546 | 850 | 13.1 | 4250 | - | 1134 | 13.1 |
47547 | 850 | 13.1 | 4250 | - | 1176 | 13.1 |
47548 | 850 | 13.1 | 4250 | - | 1218 | 13.1 |
47549 | 850 | 13.1 | 4250 | - | 1260 | 13.1 |
47550 | 850 | 13.1 | 4250 | - | 1302 | 13.1 |
47551 | 850 | 13.1 | 4250 | - | 1344 | 13.1 |
47552 | 850 | 13.1 | 4250 | - | 1386 | 13.1 |
47553 | 850 | 13.1 | 4250 | - | 1428 | 13.1 |
47554 | 850 | 13.1 | 4250 | - | 1470 | 13.1 |
47555 | 850 | 13.1 | 4250 | - | 1512 | 13.1 |
47556 | 850 | 13.1 | 4250 | - | 1554 | 13.1 |
47557 | 850 | 13.1 | 4250 | - | 1596 | 13.1 |
47558 | 850 | 13.1 | 4250 | - | 1638 | 13.1 |
47356 | 1150 | 17.7 | 5750 | 2.6 | 912 | 12.5 |
47587 | 800 | 12.4 | 4000 | - | 1120 | 12.4 |
47741 | 650 | 12.4 | 3250 | - | 1248 | 12.4 |
47588 | 800 | 12.3 | 4000 | - | 1160 | 12.3 |
47589 | 800 | 12.3 | 4000 | - | 1200 | 12.3 |
47590 | 800 | 12.3 | 4000 | - | 1240 | 12.3 |
47591 | 800 | 12.3 | 4000 | - | 1280 | 12.3 |
47592 | 800 | 12.3 | 4000 | - | 1320 | 12.3 |
47593 | 800 | 12.3 | 4000 | - | 1360 | 12.3 |
47594 | 800 | 12.3 | 4000 | - | 1400 | 12.3 |
47595 | 800 | 12.3 | 4000 | - | 1440 | 12.3 |
47596 | 800 | 12.3 | 4000 | - | 1480 | 12.3 |
47597 | 800 | 12.3 | 4000 | - | 1520 | 12.3 |
47598 | 800 | 12.3 | 4000 | - | 1560 | 12.3 |
47599 | 800 | 12.3 | 4000 | - | 1600 | 12.3 |
47600 | 800 | 12.3 | 4000 | - | 1640 | 12.3 |
47601 | 800 | 12.3 | 4000 | - | 1680 | 12.3 |
47977 | 500 | 12.0 | 2500 | - | 2000 | 12.0 |
47634 | 750 | 11.5 | 3750 | - | 1184 | 11.5 |
47635 | 750 | 11.5 | 3750 | - | 1221 | 11.5 |
47636 | 750 | 11.5 | 3750 | - | 1258 | 11.5 |
47637 | 750 | 11.5 | 3750 | - | 1295 | 11.5 |
47638 | 750 | 11.5 | 3750 | - | 1332 | 11.5 |
47639 | 750 | 11.5 | 3750 | - | 1369 | 11.5 |
47640 | 750 | 11.5 | 3750 | - | 1406 | 11.5 |
47641 | 750 | 11.5 | 3750 | - | 1443 | 11.5 |
47642 | 750 | 11.5 | 3750 | - | 1480 | 11.5 |
47643 | 750 | 11.5 | 3750 | - | 1517 | 11.5 |
47644 | 750 | 11.5 | 3750 | - | 1554 | 11.5 |
47645 | 750 | 11.5 | 3750 | - | 1591 | 11.5 |
47646 | 750 | 11.5 | 3750 | - | 1628 | 11.5 |
47647 | 750 | 11.5 | 3750 | - | 1665 | 11.5 |
47648 | 750 | 11.5 | 3750 | - | 1702 | 11.5 |
47649 | 750 | 11.5 | 3750 | - | 1739 | 11.5 |
47685 | 700 | 10.8 | 3500 | - | 1225 | 10.8 |
47686 | 700 | 10.8 | 3500 | - | 1260 | 10.8 |
47687 | 700 | 10.8 | 3500 | - | 1295 | 10.8 |
47688 | 700 | 10.8 | 3500 | - | 1330 | 10.8 |
47689 | 700 | 10.8 | 3500 | - | 1365 | 10.8 |
47690 | 700 | 10.8 | 3500 | - | 1400 | 10.8 |
47691 | 700 | 10.8 | 3500 | - | 1435 | 10.8 |
47692 | 700 | 10.8 | 3500 | - | 1470 | 10.8 |
47693 | 700 | 10.8 | 3500 | - | 1505 | 10.8 |
47694 | 700 | 10.8 | 3500 | - | 1540 | 10.8 |
47695 | 700 | 10.8 | 3500 | - | 1575 | 10.8 |
47696 | 700 | 10.8 | 3500 | - | 1610 | 10.8 |
47697 | 700 | 10.8 | 3500 | - | 1645 | 10.8 |
47698 | 700 | 10.8 | 3500 | - | 1680 | 10.8 |
47699 | 700 | 10.8 | 3500 | - | 1715 | 10.8 |
47700 | 700 | 10.8 | 3500 | - | 1750 | 10.8 |
47701 | 700 | 10.8 | 3500 | - | 1785 | 10.8 |
47874 | 550 | 10.1 | 2750 | - | 1350 | 10.1 |
47742 | 650 | 10.0 | 3250 | - | 1280 | 10.0 |
47743 | 650 | 10.0 | 3250 | - | 1312 | 10.0 |
47744 | 650 | 10.0 | 3250 | - | 1344 | 10.0 |
47745 | 650 | 10.0 | 3250 | - | 1376 | 10.0 |
47746 | 650 | 10.0 | 3250 | - | 1408 | 10.0 |
47747 | 650 | 10.0 | 3250 | - | 1440 | 10.0 |
47748 | 650 | 10.0 | 3250 | - | 1472 | 10.0 |
47749 | 650 | 10.0 | 3250 | - | 1504 | 10.0 |
47750 | 650 | 10.0 | 3250 | - | 1536 | 10.0 |
47751 | 650 | 10.0 | 3250 | - | 1568 | 10.0 |
47752 | 650 | 10.0 | 3250 | - | 1600 | 10.0 |
47753 | 650 | 10.0 | 3250 | - | 1632 | 10.0 |
47754 | 650 | 10.0 | 3250 | - | 1664 | 10.0 |
47755 | 650 | 10.0 | 3250 | - | 1696 | 10.0 |
47756 | 650 | 10.0 | 3250 | - | 1728 | 10.0 |
47757 | 650 | 10.0 | 3250 | - | 1760 | 10.0 |
47758 | 650 | 10.0 | 3250 | - | 1792 | 10.0 |
47308 | 1250 | 19.2 | 6250 | 4.8 | 682 | 9.6 |
47432 | 1000 | 17.2 | 5000 | 4.4 | 700 | 8.4 |
47464 | 950 | 16.3 | 4750 | 4.6 | 705 | 7.1 |
Overall score = score_ratio - 2 * repetitive DNA content
Redundant probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
47309 | 1250 | 19.2 | 6250 | 3.5 | 744 | 12.2 |
47310 | 1250 | 19.2 | 6250 | 3.5 | 806 | 12.2 |
47311 | 1250 | 19.2 | 6250 | 3.5 | 868 | 12.2 |
47353 | 1150 | 19.8 | 5750 | 3.8 | 741 | 12.1 |
47333 | 1200 | 18.5 | 6000 | 3.5 | 900 | 11.5 |
47330 | 1200 | 18.6 | 6000 | 3.7 | 720 | 11.2 |
47331 | 1200 | 18.5 | 6000 | 3.7 | 780 | 11.1 |
47332 | 1200 | 18.5 | 6000 | 3.7 | 840 | 11.1 |
47377 | 1100 | 18.9 | 5500 | 4.0 | 715 | 10.9 |
47378 | 1100 | 18.9 | 5500 | 4.0 | 770 | 10.9 |
47354 | 1150 | 17.7 | 5750 | 3.8 | 798 | 10.0 |
47355 | 1150 | 17.7 | 5750 | 3.8 | 855 | 10.0 |
47436 | 1000 | 18.2 | 5000 | 4.2 | 900 | 9.8 |
47404 | 1050 | 18.0 | 5250 | 4.2 | 728 | 9.7 |
47405 | 1050 | 18.0 | 5250 | 4.2 | 780 | 9.7 |
47406 | 1050 | 18.0 | 5250 | 4.2 | 832 | 9.7 |
47379 | 1100 | 17.0 | 5500 | 4.0 | 825 | 9.0 |
47380 | 1100 | 16.9 | 5500 | 4.0 | 880 | 8.9 |
47934 | 500 | 15.4 | 2500 | 3.4 | 925 | 8.6 |
47433 | 1000 | 17.2 | 5000 | 4.4 | 750 | 8.4 |
47434 | 1000 | 17.2 | 5000 | 4.4 | 800 | 8.4 |
47435 | 1000 | 17.2 | 5000 | 4.4 | 850 | 8.4 |
47407 | 1050 | 16.2 | 5250 | 4.2 | 884 | 7.8 |
47468 | 950 | 16.6 | 4750 | 4.6 | 893 | 7.3 |
47465 | 950 | 16.3 | 4750 | 4.6 | 752 | 7.1 |
47466 | 950 | 16.3 | 4750 | 4.6 | 799 | 7.1 |
47467 | 950 | 16.3 | 4750 | 4.6 | 846 | 7.1 |
47503 | 900 | 16.4 | 4500 | 4.7 | 900 | 7.0 |
47676 | 700 | 14.9 | 3500 | 4.6 | 910 | 5.8 |
47499 | 900 | 15.5 | 4500 | 4.9 | 720 | 5.7 |
47500 | 900 | 15.5 | 4500 | 4.9 | 765 | 5.7 |
47501 | 900 | 15.5 | 4500 | 4.9 | 810 | 5.7 |
47502 | 900 | 15.5 | 4500 | 4.9 | 855 | 5.7 |
47858 | 550 | 14.1 | 2750 | 4.4 | 918 | 5.4 |
Overall score = score_ratio - 2 * repetitive DNA content