Automated design of genomic Southern blot probes

Mike DR Croning, David G Fricker, Noboru H Komiyama and Seth GN Grant

Design Case - ProbeDesign37 - back to list

Summary
Image
Unique putative probes (0)
Putative probes (714)
Redundant probes (92)

Summary

`./analyse_probe_search_results : Mon Sep 5 11:33:34 2005`

Connected to host: host, as user: user
Database       : southern_blot_designs

Fetched probe design: ProbeDesign37
  assembly      : NCBIM34
  bias          : 3prime
  chromosome    : X
  id            : 13
  strand        : 1
  -------------

Design window length: 18537bp

All jobs for probe design are successful - total: 363
Fetched conf : Exonerate mouse_NCBIM34 (id: 1)
  Genome file(s) at: /blastdb/Mouse/NCBIM34/softmasked_dusted
Fetched 7251 putative probes to analyse

Selection criteria to rank probes:
  Minimum score ratio             : 10
  (i.e. self-hit must score at least 10 times higher than the next best hit)
  Maximum percent repetitive bases: 5
  Favour probes to the 3prime end of design window
  ------------------------

Putative probes without hits                : 0
Putative probes with single_self_hit        : 7251/7251
Putative probes exceeding selection criteria: 806/7251

PASSED (GREEN) AND FAILED PUTATIVE PROBES IN THE DESIGN WINDOW
--------------------------------------------------------------

Image

Unique (yellow), passed (green) and failed putative probes in the design window

Unique putative probes

No probes

Putative probes

Putative probe ID	Length	Score ratio	Actual	%rep DNA	Distance	Overall
11631	1000	33.3	5000	-	17400	33.3
11632	1000	33.3	5000	-	17450	33.3
11633	1000	33.3	5000	-	17500	33.3
12004	950	31.7	4750	-	17390	31.7
12005	950	31.7	4750	-	17437	31.7
12006	950	31.7	4750	-	17484	31.7
12007	950	31.7	4750	-	17531	31.7
12008	950	31.7	4750	-	17578	31.7
11630	1000	31.6	5000	-	17350	31.6
11328	1000	32.5	5000	1.0	2250	30.5
11683	950	30.8	4750	0.2	2303	30.4
11320	1000	32.3	5000	1.0	1850	30.3
11321	1000	32.3	5000	1.0	1900	30.3
11322	1000	32.3	5000	1.0	1950	30.3
11323	1000	32.3	5000	1.0	2000	30.3
11324	1000	32.3	5000	1.0	2050	30.3
11325	1000	32.3	5000	1.0	2100	30.3
11326	1000	32.3	5000	1.0	2150	30.3
11327	1000	32.3	5000	1.0	2200	30.3
12003	950	30.1	4750	-	17343	30.1
12395	900	30.0	4500	-	17370	30.0
12396	900	30.0	4500	-	17415	30.0
12397	900	30.0	4500	-	17460	30.0
12398	900	30.0	4500	-	17505	30.0
12399	900	30.0	4500	-	17550	30.0
12400	900	30.0	4500	-	17595	30.0
11682	950	30.8	4750	0.5	2256	29.8
12060	900	29.2	4500	-	2295	29.2
12061	900	29.2	4500	-	2340	29.2
11629	1000	28.9	5000	-	17300	28.9
11673	950	30.6	4750	1.1	1833	28.5
12815	850	28.3	4250	-	17388	28.3
12816	850	28.3	4250	-	17430	28.3
12817	850	28.3	4250	-	17472	28.3
12818	850	28.3	4250	-	17514	28.3
12819	850	28.3	4250	-	17556	28.3
12820	850	28.3	4250	-	17598	28.3
11319	1000	32.3	5000	2.1	1800	28.1
12455	850	27.6	4250	-	2268	27.6
12456	850	27.6	4250	-	2310	27.6
12457	850	27.6	4250	-	2352	27.6
12458	850	27.6	4250	-	2394	27.6
12002	950	27.5	4750	-	17296	27.5
12394	900	27.4	4500	-	17325	27.4
12814	850	26.9	4250	-	17346	26.9
12050	900	29.0	4500	1.1	1845	26.8
12051	900	29.0	4500	1.1	1890	26.8
13257	800	26.7	4000	-	17360	26.7
13258	800	26.7	4000	-	17400	26.7
13259	800	26.7	4000	-	17440	26.7
13260	800	26.7	4000	-	17480	26.7
13261	800	26.7	4000	-	17520	26.7
13262	800	26.7	4000	-	17560	26.7
13263	800	26.7	4000	-	17600	26.7
12881	800	26.3	4000	-	2320	26.3
12880	800	26.0	4000	-	2280	26.0
12882	800	26.0	4000	-	2360	26.0
12883	800	26.0	4000	-	2400	26.0
12884	800	26.0	4000	-	2440	26.0
12445	850	27.4	4250	1.2	1848	25.1
12446	850	27.4	4250	1.2	1890	25.1
12447	850	27.4	4250	1.2	1932	25.1
13736	750	25.0	3750	-	17353	25.0
13737	750	25.0	3750	-	17390	25.0
13738	750	25.0	3750	-	17427	25.0
13739	750	25.0	3750	-	17464	25.0
13740	750	25.0	3750	-	17501	25.0
13741	750	25.0	3750	-	17538	25.0
13742	750	25.0	3750	-	17575	25.0
13330	750	24.7	3750	-	2331	24.7
13331	750	24.7	3750	-	2368	24.7
12813	850	24.6	4250	-	17304	24.6
13329	750	24.4	3750	-	2294	24.4
13332	750	24.4	3750	-	2405	24.4
13333	750	24.4	3750	-	2442	24.4
13334	750	24.4	3750	-	2479	24.4
12444	850	27.4	4250	1.8	1806	23.9
14244	700	23.3	3500	-	17360	23.3
14245	700	23.3	3500	-	17395	23.3
14246	700	23.3	3500	-	17430	23.3
14247	700	23.3	3500	-	17465	23.3
14248	700	23.3	3500	-	17500	23.3
14249	700	23.3	3500	-	17535	23.3
14250	700	23.3	3500	-	17570	23.3
12869	800	25.8	4000	1.2	1840	23.3
12870	800	25.8	4000	1.2	1880	23.3
12871	800	25.8	4000	1.2	1920	23.3
12872	800	25.8	4000	1.2	1960	23.3
12873	800	25.8	4000	1.2	2000	23.3
13328	750	24.4	3750	0.5	2257	23.3
11672	950	30.6	4750	3.7	1786	23.3
13256	800	23.1	4000	-	17320	23.1
13814	700	23.0	3500	-	2310	23.0
13815	700	23.0	3500	-	2345	23.0
13816	700	23.0	3500	-	2380	23.0
13817	700	23.0	3500	-	2415	23.0
14144	700	23.2	3500	0.1	13860	22.9
13813	700	22.7	3500	-	2275	22.7
13818	700	22.7	3500	-	2450	22.7
13819	700	22.7	3500	-	2485	22.7
13820	700	22.7	3500	-	2520	22.7
11329	1000	32.5	5000	4.9	2300	22.7
13906	700	22.4	3500	-	5530	22.4
13907	700	22.4	3500	-	5565	22.4
13416	750	22.2	3750	-	5513	22.2
12393	900	25.7	4500	1.8	17280	22.2
14121	700	22.2	3500	-	13055	22.2
13905	700	22.0	3500	-	5495	22.0
14120	700	22.2	3500	0.1	13020	21.9
13735	750	21.7	3750	-	17316	21.7
14801	650	21.7	3250	-	17376	21.7
14802	650	21.7	3250	-	17408	21.7
14803	650	21.7	3250	-	17440	21.7
14804	650	21.7	3250	-	17472	21.7
14805	650	21.7	3250	-	17504	21.7
14806	650	21.7	3250	-	17536	21.7
14807	650	21.7	3250	-	17568	21.7
14808	650	21.7	3250	-	17600	21.7
12062	900	29.2	4500	3.8	2385	21.7
13821	700	22.7	3500	0.6	2555	21.6
13293	750	21.6	3750	-	962	21.6
13316	750	24.2	3750	1.3	1813	21.5
13317	750	24.2	3750	1.3	1850	21.5
13318	750	24.2	3750	1.3	1887	21.5
13319	750	24.2	3750	1.3	1924	21.5
13320	750	24.2	3750	1.3	1961	21.5
13321	750	24.2	3750	1.3	1998	21.5
13322	750	24.2	3750	1.3	2035	21.5
14692	650	21.5	3250	-	13888	21.5
13619	750	21.4	3750	-	13024	21.4
14331	650	21.4	3250	-	2336	21.4
14332	650	21.4	3250	-	2368	21.4
14333	650	21.4	3250	-	2400	21.4
14334	650	21.4	3250	-	2432	21.4
14335	650	21.4	3250	-	2464	21.4
14336	650	21.4	3250	-	2496	21.4
14243	700	21.3	3500	-	17325	21.3
14329	650	21.1	3250	-	2272	21.1
14330	650	21.1	3250	-	2304	21.1
14337	650	21.1	3250	-	2528	21.1
14338	650	21.1	3250	-	2560	21.1
14339	650	21.1	3250	-	2592	21.1
14431	650	20.8	3250	-	5536	20.8
14432	650	20.8	3250	-	5568	20.8
14433	650	20.8	3250	-	5600	20.8
14691	650	21.5	3250	0.5	13856	20.6
14665	650	20.6	3250	-	13024	20.6
14666	650	20.6	3250	-	13056	20.6
14667	650	20.6	3250	-	13088	20.6
14800	650	20.6	3250	-	17344	20.6
14430	650	20.4	3250	-	5504	20.4
13335	750	24.4	3750	2.0	2516	20.4
13775	700	20.1	3500	-	945	20.1
13776	700	20.1	3500	-	980	20.1
13777	700	20.1	3500	-	1015	20.1
14122	700	20.0	3500	-	13090	20.0
15396	600	20.0	3000	-	17370	20.0
15397	600	20.0	3000	-	17400	20.0
15398	600	20.0	3000	-	17430	20.0
15399	600	20.0	3000	-	17460	20.0
15400	600	20.0	3000	-	17490	20.0
15401	600	20.0	3000	-	17520	20.0
15402	600	20.0	3000	-	17550	20.0
15403	600	20.0	3000	-	17580	20.0
15279	600	19.9	3000	-	13860	19.9
15280	600	19.9	3000	-	13890	19.9
15281	600	19.9	3000	-	13920	19.9
15282	600	19.9	3000	-	13950	19.9
14894	600	19.7	3000	-	2310	19.7
14895	600	19.7	3000	-	2340	19.7
14896	600	19.7	3000	-	2370	19.7
14897	600	19.7	3000	-	2400	19.7
14898	600	19.7	3000	-	2430	19.7
14899	600	19.7	3000	-	2460	19.7
14900	600	19.7	3000	-	2490	19.7
14901	600	19.7	3000	-	2520	19.7
13800	700	22.6	3500	1.4	1820	19.7
13801	700	22.6	3500	1.4	1855	19.7
13802	700	22.6	3500	1.4	1890	19.7
13803	700	22.6	3500	1.4	1925	19.7
13804	700	22.6	3500	1.4	1960	19.7
13805	700	22.6	3500	1.4	1995	19.7
13806	700	22.6	3500	1.4	2030	19.7
13807	700	22.6	3500	1.4	2065	19.7
13808	700	22.6	3500	1.4	2100	19.7
14049	700	21.9	3500	1.1	10535	19.6
14893	600	19.5	3000	-	2280	19.5
14902	600	19.5	3000	-	2550	19.5
14903	600	19.5	3000	-	2580	19.5
14904	600	19.5	3000	-	2610	19.5
14905	600	19.5	3000	-	2640	19.5
15255	600	19.5	3000	-	13140	19.5
15006	600	19.7	3000	0.2	5670	19.4
12459	850	27.6	4250	4.1	2436	19.4
15002	600	19.2	3000	-	5550	19.2
15003	600	19.2	3000	-	5580	19.2
15004	600	19.2	3000	-	5610	19.2
15005	600	19.2	3000	-	5640	19.2
15252	600	19.0	3000	-	13050	19.0
15253	600	19.0	3000	-	13080	19.0
15254	600	19.0	3000	-	13110	19.0
15395	600	19.0	3000	-	17340	19.0
12960	800	25.2	4000	3.1	5480	18.9
13255	800	22.9	4000	2.0	17280	18.9
14799	650	18.8	3250	-	17312	18.8
12885	800	26.0	4000	3.6	2480	18.7
14288	650	18.7	3250	-	960	18.7
14289	650	18.7	3250	-	992	18.7
14290	650	18.7	3250	-	1024	18.7
14291	650	18.7	3250	-	1056	18.7
15251	600	19.0	3000	0.2	13020	18.7
14668	650	18.6	3250	-	13120	18.6
15001	600	18.5	3000	-	5520	18.5
14242	700	20.2	3500	0.9	17290	18.5
16058	550	18.3	2750	-	17361	18.3
16059	550	18.3	2750	-	17388	18.3
16060	550	18.3	2750	-	17415	18.3
16061	550	18.3	2750	-	17442	18.3
16062	550	18.3	2750	-	17469	18.3
16063	550	18.3	2750	-	17496	18.3
16064	550	18.3	2750	-	17523	18.3
16065	550	18.3	2750	-	17550	18.3
16066	550	18.3	2750	-	17577	18.3
15929	550	18.2	2750	-	13878	18.2
15930	550	18.2	2750	-	13905	18.2
15931	550	18.2	2750	-	13932	18.2
15932	550	18.2	2750	-	13959	18.2
15933	550	18.2	2750	-	13986	18.2
14693	650	21.5	3250	1.7	13920	18.1
15501	550	18.1	2750	-	2322	18.1
15502	550	18.1	2750	-	2349	18.1
15503	550	18.1	2750	-	2376	18.1
15504	550	18.1	2750	-	2403	18.1
15505	550	18.1	2750	-	2430	18.1
15506	550	18.1	2750	-	2457	18.1
15507	550	18.1	2750	-	2484	18.1
15508	550	18.1	2750	-	2511	18.1
15509	550	18.1	2750	-	2538	18.1
15510	550	18.1	2750	-	2565	18.1
15511	550	18.1	2750	-	2592	18.1
15625	550	18.1	2750	-	5670	18.1
15626	550	18.1	2750	-	5697	18.1
15901	550	18.1	2750	-	13122	18.1
15902	550	18.1	2750	-	13149	18.1
15903	550	18.1	2750	-	13176	18.1
14315	650	21.0	3250	1.5	1824	17.9
14316	650	21.0	3250	1.5	1856	17.9
14317	650	21.0	3250	1.5	1888	17.9
14318	650	21.0	3250	1.5	1920	17.9
14319	650	21.0	3250	1.5	1952	17.9
14320	650	21.0	3250	1.5	1984	17.9
14321	650	21.0	3250	1.5	2016	17.9
14322	650	21.0	3250	1.5	2048	17.9
14323	650	21.0	3250	1.5	2080	17.9
14324	650	21.0	3250	1.5	2112	17.9
14325	650	21.0	3250	1.5	2144	17.9
15499	550	17.9	2750	-	2268	17.9
15500	550	17.9	2750	-	2295	17.9
15512	550	17.9	2750	-	2619	17.9
15513	550	17.9	2750	-	2646	17.9
15514	550	17.9	2750	-	2673	17.9
15515	550	17.9	2750	-	2700	17.9
15904	550	17.9	2750	-	13203	17.9
14587	650	20.3	3250	1.2	10528	17.9
14588	650	20.3	3250	1.2	10560	17.9
14589	650	20.3	3250	1.2	10592	17.9
15620	550	17.6	2750	-	5535	17.6
15621	550	17.6	2750	-	5562	17.6
15622	550	17.6	2750	-	5589	17.6
15623	550	17.6	2750	-	5616	17.6
15624	550	17.6	2750	-	5643	17.6
15000	600	18.9	3000	0.7	5490	17.5
15898	550	17.4	2750	-	13041	17.4
15899	550	17.4	2750	-	13068	17.4
15900	550	17.4	2750	-	13095	17.4
15394	600	17.3	3000	-	17310	17.3
14849	600	17.2	3000	-	960	17.2
14850	600	17.2	3000	-	990	17.2
14851	600	17.2	3000	-	1020	17.2
14852	600	17.2	3000	-	1050	17.2
14853	600	17.2	3000	-	1080	17.2
14854	600	17.2	3000	-	1110	17.2
13620	750	21.4	3750	2.1	13061	17.2
15256	600	17.1	3000	-	13170	17.1
16057	550	17.1	2750	-	17334	17.1
14434	650	20.8	3250	2.0	5632	16.8
15934	550	18.2	2750	0.7	14013	16.8
13292	750	21.6	3750	2.4	925	16.8
16777	500	16.7	2500	-	17375	16.7
16778	500	16.7	2500	-	17400	16.7
16779	500	16.7	2500	-	17425	16.7
16780	500	16.7	2500	-	17450	16.7
16781	500	16.7	2500	-	17475	16.7
16782	500	16.7	2500	-	17500	16.7
16783	500	16.7	2500	-	17525	16.7
16784	500	16.7	2500	-	17550	16.7
16785	500	16.7	2500	-	17575	16.7
16786	500	16.7	2500	-	17600	16.7
16637	500	16.6	2500	-	13875	16.6
16638	500	16.6	2500	-	13900	16.6
16639	500	16.6	2500	-	13925	16.6
16640	500	16.6	2500	-	13950	16.6
16641	500	16.6	2500	-	13975	16.6
16642	500	16.6	2500	-	14000	16.6
13415	750	21.3	3750	2.4	5476	16.5
16175	500	16.4	2500	-	2325	16.4
16176	500	16.4	2500	-	2350	16.4
16177	500	16.4	2500	-	2375	16.4
16178	500	16.4	2500	-	2400	16.4
16179	500	16.4	2500	-	2425	16.4
16180	500	16.4	2500	-	2450	16.4
16181	500	16.4	2500	-	2475	16.4
16182	500	16.4	2500	-	2500	16.4
16183	500	16.4	2500	-	2525	16.4
16184	500	16.4	2500	-	2550	16.4
16185	500	16.4	2500	-	2575	16.4
16186	500	16.4	2500	-	2600	16.4
16187	500	16.4	2500	-	2625	16.4
16308	500	16.4	2500	-	5650	16.4
16309	500	16.4	2500	-	5675	16.4
16310	500	16.4	2500	-	5700	16.4
16311	500	16.4	2500	-	5725	16.4
16312	500	16.4	2500	-	5750	16.4
16607	500	16.4	2500	-	13125	16.4
16608	500	16.4	2500	-	13150	16.4
16609	500	16.4	2500	-	13175	16.4
16610	500	16.4	2500	-	13200	16.4
16611	500	16.4	2500	-	13225	16.4
14669	650	18.6	3250	1.1	13152	16.4
13148	800	22.9	4000	3.2	13000	16.4
13734	750	20.8	3750	2.3	17279	16.3
15627	550	18.1	2750	0.9	5724	16.3
15619	550	16.3	2750	-	5508	16.3
12846	800	23.0	4000	3.4	920	16.2
16173	500	16.2	2500	-	2275	16.2
16174	500	16.2	2500	-	2300	16.2
16188	500	16.2	2500	-	2650	16.2
16189	500	16.2	2500	-	2675	16.2
16190	500	16.2	2500	-	2700	16.2
16191	500	16.2	2500	-	2725	16.2
16192	500	16.2	2500	-	2750	16.2
16612	500	16.2	2500	-	13250	16.2
15168	600	18.8	3000	1.3	10530	16.1
15169	600	18.8	3000	1.3	10560	16.1
15170	600	18.8	3000	1.3	10590	16.1
15171	600	18.8	3000	1.3	10620	16.1
16304	500	16.0	2500	-	5550	16.0
16305	500	16.0	2500	-	5575	16.0
16306	500	16.0	2500	-	5600	16.0
16307	500	16.0	2500	-	5625	16.0
14878	600	19.4	3000	1.7	1830	16.0
14879	600	19.4	3000	1.7	1860	16.0
14880	600	19.4	3000	1.7	1890	16.0
14881	600	19.4	3000	1.7	1920	16.0
14882	600	19.4	3000	1.7	1950	16.0
14883	600	19.4	3000	1.7	1980	16.0
14884	600	19.4	3000	1.7	2010	16.0
14885	600	19.4	3000	1.7	2040	16.0
14886	600	19.4	3000	1.7	2070	16.0
14887	600	19.4	3000	1.7	2100	16.0
14888	600	19.4	3000	1.7	2130	16.0
14889	600	19.4	3000	1.7	2160	16.0
14890	600	19.4	3000	1.7	2190	16.0
16056	550	15.9	2750	-	17307	15.9
16303	500	15.8	2500	-	5525	15.8
16603	500	15.8	2500	-	13025	15.8
16604	500	15.8	2500	-	13050	15.8
16605	500	15.8	2500	-	13075	15.8
16606	500	15.8	2500	-	13100	15.8
16776	500	15.8	2500	-	17350	15.8
15450	550	15.8	2750	-	945	15.8
15451	550	15.8	2750	-	972	15.8
15452	550	15.8	2750	-	999	15.8
15453	550	15.8	2750	-	1026	15.8
15454	550	15.8	2750	-	1053	15.8
15455	550	15.8	2750	-	1080	15.8
15456	550	15.8	2750	-	1107	15.8
15457	550	15.8	2750	-	1134	15.8
15458	550	15.8	2750	-	1161	15.8
13417	750	24.0	3750	4.1	5550	15.8
16302	500	15.7	2500	-	5500	15.7
15905	550	15.7	2750	-	13230	15.7
15257	600	17.1	3000	0.8	13200	15.5
15928	550	18.2	2750	1.5	13851	15.3
16775	500	15.2	2500	-	17325	15.2
15810	550	18.0	2750	1.5	10665	15.1
15811	550	18.0	2750	1.5	10692	15.1
14048	700	21.9	3500	3.4	10500	15.0
17593	450	15.0	2250	-	17358	15.0
17594	450	15.0	2250	-	17380	15.0
17595	450	15.0	2250	-	17402	15.0
17596	450	15.0	2250	-	17424	15.0
17597	450	15.0	2250	-	17446	15.0
17598	450	15.0	2250	-	17468	15.0
17599	450	15.0	2250	-	17490	15.0
17600	450	15.0	2250	-	17512	15.0
17601	450	15.0	2250	-	17534	15.0
17602	450	15.0	2250	-	17556	15.0
17603	450	15.0	2250	-	17578	15.0
17604	450	15.0	2250	-	17600	15.0
15809	550	17.9	2750	1.5	10638	14.9
17434	450	14.9	2250	-	13860	14.9
17435	450	14.9	2250	-	13882	14.9
17436	450	14.9	2250	-	13904	14.9
17437	450	14.9	2250	-	13926	14.9
17438	450	14.9	2250	-	13948	14.9
17439	450	14.9	2250	-	13970	14.9
17440	450	14.9	2250	-	13992	14.9
17441	450	14.9	2250	-	14014	14.9
15897	550	17.4	2750	1.3	13014	14.9
16909	450	14.8	2250	-	2310	14.8
16910	450	14.8	2250	-	2332	14.8
16911	450	14.8	2250	-	2354	14.8
16912	450	14.8	2250	-	2376	14.8
16913	450	14.8	2250	-	2398	14.8
16914	450	14.8	2250	-	2420	14.8
16915	450	14.8	2250	-	2442	14.8
16916	450	14.8	2250	-	2464	14.8
16917	450	14.8	2250	-	2486	14.8
16918	450	14.8	2250	-	2508	14.8
16919	450	14.8	2250	-	2530	14.8
16920	450	14.8	2250	-	2552	14.8
16921	450	14.8	2250	-	2574	14.8
16922	450	14.8	2250	-	2596	14.8
16923	450	14.8	2250	-	2618	14.8
16924	450	14.8	2250	-	2640	14.8
17063	450	14.8	2250	-	5698	14.8
17064	450	14.8	2250	-	5720	14.8
17065	450	14.8	2250	-	5742	14.8
17066	450	14.8	2250	-	5764	14.8
17067	450	14.8	2250	-	5786	14.8
17068	450	14.8	2250	-	5808	14.8
17401	450	14.8	2250	-	13134	14.8
17402	450	14.8	2250	-	13156	14.8
17403	450	14.8	2250	-	13178	14.8
17404	450	14.8	2250	-	13200	14.8
17405	450	14.8	2250	-	13222	14.8
17406	450	14.8	2250	-	13244	14.8
17407	450	14.8	2250	-	13266	14.8
17408	450	14.8	2250	-	13288	14.8
16907	450	14.6	2250	-	2266	14.6
16908	450	14.6	2250	-	2288	14.6
16927	450	14.6	2250	-	2706	14.6
16928	450	14.6	2250	-	2728	14.6
16929	450	14.6	2250	-	2750	14.6
16930	450	14.6	2250	-	2772	14.6
16931	450	14.6	2250	-	2794	14.6
16774	500	14.5	2500	-	17300	14.5
17056	450	14.4	2250	-	5544	14.4
17057	450	14.4	2250	-	5566	14.4
17058	450	14.4	2250	-	5588	14.4
17059	450	14.4	2250	-	5610	14.4
17060	450	14.4	2250	-	5632	14.4
16120	500	14.4	2500	-	950	14.4
16121	500	14.4	2500	-	975	14.4
16122	500	14.4	2500	-	1000	14.4
16123	500	14.4	2500	-	1025	14.4
16124	500	14.4	2500	-	1050	14.4
16125	500	14.4	2500	-	1075	14.4
16126	500	14.4	2500	-	1100	14.4
16127	500	14.4	2500	-	1125	14.4
16128	500	14.4	2500	-	1150	14.4
16129	500	14.4	2500	-	1175	14.4
13551	750	22.9	3750	4.3	10508	14.3
16613	500	14.3	2500	-	13275	14.3
15805	550	17.2	2750	1.5	10530	14.3
15806	550	17.2	2750	1.5	10557	14.3
15807	550	17.2	2750	1.5	10584	14.3
15808	550	17.2	2750	1.5	10611	14.3
15172	600	19.6	3000	2.7	10650	14.3
17396	450	14.2	2250	-	13024	14.2
17397	450	14.2	2250	-	13046	14.2
17398	450	14.2	2250	-	13068	14.2
17399	450	14.2	2250	-	13090	14.2
17400	450	14.2	2250	-	13112	14.2
17054	450	14.2	2250	-	5500	14.2
15483	550	17.7	2750	1.8	1836	14.1
15484	550	17.7	2750	1.8	1863	14.1
15485	550	17.7	2750	1.8	1890	14.1
15486	550	17.7	2750	1.8	1917	14.1
15487	550	17.7	2750	1.8	1944	14.1
15488	550	17.7	2750	1.8	1971	14.1
15489	550	17.7	2750	1.8	1998	14.1
15490	550	17.7	2750	1.8	2025	14.1
15491	550	17.7	2750	1.8	2052	14.1
15492	550	17.7	2750	1.8	2079	14.1
15493	550	17.7	2750	1.8	2106	14.1
15494	550	17.7	2750	1.8	2133	14.1
15495	550	17.7	2750	1.8	2160	14.1
15496	550	17.7	2750	1.8	2187	14.1
15497	550	17.7	2750	1.8	2214	14.1
15498	550	17.7	2750	1.8	2241	14.1
14287	650	18.7	3250	2.3	928	14.1
17282	450	14.1	2250	-	10516	14.1
17283	450	14.1	2250	-	10538	14.1
16313	500	16.4	2500	1.2	5775	14.0
14340	650	21.1	3250	3.5	2624	14.0
17055	450	14.0	2250	-	5522	14.0
17592	450	14.0	2250	-	17336	14.0
14798	650	18.6	3250	2.5	17280	13.6
18495	400	13.3	2000	-	17360	13.3
18496	400	13.3	2000	-	17380	13.3
18497	400	13.3	2000	-	17400	13.3
18498	400	13.3	2000	-	17420	13.3
18499	400	13.3	2000	-	17440	13.3
18500	400	13.3	2000	-	17460	13.3
18501	400	13.3	2000	-	17480	13.3
18502	400	13.3	2000	-	17500	13.3
18503	400	13.3	2000	-	17520	13.3
18504	400	13.3	2000	-	17540	13.3
18505	400	13.3	2000	-	17560	13.3
18506	400	13.3	2000	-	17580	13.3
18507	400	13.3	2000	-	17600	13.3
18320	400	13.2	2000	-	13860	13.2
18321	400	13.2	2000	-	13880	13.2
18322	400	13.2	2000	-	13900	13.2
18323	400	13.2	2000	-	13920	13.2
18324	400	13.2	2000	-	13940	13.2
18325	400	13.2	2000	-	13960	13.2
18326	400	13.2	2000	-	13980	13.2
18327	400	13.2	2000	-	14000	13.2
17744	400	13.2	2000	-	2340	13.2
17745	400	13.2	2000	-	2360	13.2
17746	400	13.2	2000	-	2380	13.2
17747	400	13.2	2000	-	2400	13.2
17748	400	13.2	2000	-	2420	13.2
17749	400	13.2	2000	-	2440	13.2
17750	400	13.2	2000	-	2460	13.2
17751	400	13.2	2000	-	2480	13.2
17752	400	13.2	2000	-	2500	13.2
17753	400	13.2	2000	-	2520	13.2
17754	400	13.2	2000	-	2540	13.2
17755	400	13.2	2000	-	2560	13.2
17756	400	13.2	2000	-	2580	13.2
17757	400	13.2	2000	-	2600	13.2
17758	400	13.2	2000	-	2620	13.2
17759	400	13.2	2000	-	2640	13.2
17914	400	13.2	2000	-	5740	13.2
17915	400	13.2	2000	-	5760	13.2
17916	400	13.2	2000	-	5780	13.2
17917	400	13.2	2000	-	5800	13.2
17918	400	13.2	2000	-	5820	13.2
17919	400	13.2	2000	-	5840	13.2
17920	400	13.2	2000	-	5860	13.2
18284	400	13.2	2000	-	13140	13.2
18285	400	13.2	2000	-	13160	13.2
18286	400	13.2	2000	-	13180	13.2
18287	400	13.2	2000	-	13200	13.2
18288	400	13.2	2000	-	13220	13.2
18289	400	13.2	2000	-	13240	13.2
18290	400	13.2	2000	-	13260	13.2
18291	400	13.2	2000	-	13280	13.2
18292	400	13.2	2000	-	13300	13.2
18293	400	13.2	2000	-	13320	13.2
14906	600	19.5	3000	3.2	2670	13.1
16508	500	16.3	2500	1.6	10650	13.1
16509	500	16.3	2500	1.6	10675	13.1
16510	500	16.3	2500	1.6	10700	13.1
16511	500	16.3	2500	1.6	10725	13.1
17591	450	13.0	2250	-	17314	13.0
17741	400	13.0	2000	-	2280	13.0
17742	400	13.0	2000	-	2300	13.0
17765	400	13.0	2000	-	2760	13.0
17766	400	13.0	2000	-	2780	13.0
17767	400	13.0	2000	-	2800	13.0
17768	400	13.0	2000	-	2820	13.0
17769	400	13.0	2000	-	2840	13.0
18294	400	13.0	2000	-	13340	13.0
16636	500	16.6	2500	1.8	13850	13.0
16847	450	12.9	2250	-	946	12.9
16848	450	12.9	2250	-	968	12.9
16849	450	12.9	2250	-	990	12.9
16850	450	12.9	2250	-	1012	12.9
16851	450	12.9	2250	-	1034	12.9
16852	450	12.9	2250	-	1056	12.9
16853	450	12.9	2250	-	1078	12.9
16854	450	12.9	2250	-	1100	12.9
16855	450	12.9	2250	-	1122	12.9
16856	450	12.9	2250	-	1144	12.9
16857	450	12.9	2250	-	1166	12.9
16858	450	12.9	2250	-	1188	12.9
17409	450	12.9	2250	-	13310	12.9
14848	600	17.2	3000	2.2	930	12.9
15283	600	19.9	3000	3.5	13980	12.9
17410	450	12.9	2250	-	13332	12.9
17904	400	12.8	2000	-	5540	12.8
17905	400	12.8	2000	-	5560	12.8
17906	400	12.8	2000	-	5580	12.8
17907	400	12.8	2000	-	5600	12.8
17908	400	12.8	2000	-	5620	12.8
17909	400	12.8	2000	-	5640	12.8
13294	750	21.6	3750	4.4	999	12.8
18279	400	12.7	2000	-	13040	12.7
18280	400	12.7	2000	-	13060	12.7
18281	400	12.7	2000	-	13080	12.7
18282	400	12.7	2000	-	13100	12.7
18494	400	12.7	2000	-	17340	12.7
17902	400	12.6	2000	-	5500	12.6
15618	550	17.3	2750	2.4	5481	12.6
18153	400	12.5	2000	-	10520	12.5
18154	400	12.5	2000	-	10540	12.5
18155	400	12.5	2000	-	10560	12.5
18156	400	12.5	2000	-	10580	12.5
17740	400	13.0	2000	0.2	2260	12.5
16503	500	15.6	2500	1.6	10525	12.4
16504	500	15.6	2500	1.6	10550	12.4
16505	500	15.6	2500	1.6	10575	12.4
16506	500	15.6	2500	1.6	10600	12.4
16507	500	15.6	2500	1.6	10625	12.4
17903	400	12.3	2000	-	5520	12.3
16614	500	14.3	2500	1.0	13300	12.3
16172	500	16.2	2500	2.0	2250	12.2
18278	400	12.7	2000	0.2	13020	12.2
16156	500	16.1	2500	2.0	1850	12.1
16157	500	16.1	2500	2.0	1875	12.1
16158	500	16.1	2500	2.0	1900	12.1
16159	500	16.1	2500	2.0	1925	12.1
16160	500	16.1	2500	2.0	1950	12.1
16161	500	16.1	2500	2.0	1975	12.1
16162	500	16.1	2500	2.0	2000	12.1
16163	500	16.1	2500	2.0	2025	12.1
16164	500	16.1	2500	2.0	2050	12.1
16165	500	16.1	2500	2.0	2075	12.1
16166	500	16.1	2500	2.0	2100	12.1
16167	500	16.1	2500	2.0	2125	12.1
16168	500	16.1	2500	2.0	2150	12.1
16169	500	16.1	2500	2.0	2175	12.1
16170	500	16.1	2500	2.0	2200	12.1
16171	500	16.1	2500	2.0	2225	12.1
14292	650	18.7	3250	3.4	1088	11.9
13618	750	20.9	3750	4.5	12987	11.9
15393	600	17.1	3000	2.7	17280	11.8
14586	650	20.3	3250	4.3	10496	11.7
14664	650	20.6	3250	4.5	12992	11.6
18492	400	11.6	2000	-	17300	11.6
18493	400	11.6	2000	-	17320	11.6
14143	700	21.2	3500	4.9	13825	11.5
17675	400	11.5	2000	-	960	11.5
17676	400	11.5	2000	-	980	11.5
17677	400	11.5	2000	-	1000	11.5
17678	400	11.5	2000	-	1020	11.5
17679	400	11.5	2000	-	1040	11.5
17680	400	11.5	2000	-	1060	11.5
17681	400	11.5	2000	-	1080	11.5
17682	400	11.5	2000	-	1100	11.5
17683	400	11.5	2000	-	1120	11.5
17684	400	11.5	2000	-	1140	11.5
17685	400	11.5	2000	-	1160	11.5
17686	400	11.5	2000	-	1180	11.5
18295	400	11.5	2000	-	13360	11.5
18296	400	11.4	2000	-	13380	11.4
17590	450	13.0	2250	0.9	17292	11.2
17288	450	14.7	2250	1.8	10648	11.2
17289	450	14.7	2250	1.8	10670	11.2
17290	450	14.7	2250	1.8	10692	11.2
17291	450	14.7	2250	1.8	10714	11.2
17292	450	14.7	2250	1.8	10736	11.2
17293	450	14.7	2250	1.8	10758	11.2
17294	450	14.7	2250	1.8	10780	11.2
13774	700	20.1	3500	4.7	910	10.7
14429	650	17.4	3250	3.4	5472	10.6
17284	450	14.1	2250	1.8	10560	10.5
17285	450	14.1	2250	1.8	10582	10.5
17286	450	14.1	2250	1.8	10604	10.5
17287	450	14.1	2250	1.8	10626	10.5
13778	700	20.1	3500	4.9	1050	10.4
14123	700	18.6	3500	4.3	13125	10.0
17674	400	11.5	2000	0.8	940	10.0
16512	500	16.3	2500	3.2	10750	9.9
17069	450	14.8	2250	2.4	5830	9.9
16055	550	15.7	2750	2.9	17280	9.9
11628	1000	18.9	5000	4.5	17250	9.9
14855	600	17.2	3000	4.0	1140	9.2
18159	400	13.1	2000	2.0	10640	9.1
18160	400	13.1	2000	2.0	10660	9.1
18161	400	13.1	2000	2.0	10680	9.1
18162	400	13.1	2000	2.0	10700	9.1
18163	400	13.1	2000	2.0	10720	9.1
18164	400	13.1	2000	2.0	10740	9.1
18165	400	13.1	2000	2.0	10760	9.1
18166	400	13.1	2000	2.0	10780	9.1
18167	400	13.1	2000	2.0	10800	9.1
18168	400	13.1	2000	2.0	10820	9.1
18169	400	13.1	2000	2.0	10840	9.1
18297	400	11.4	2000	1.2	13400	8.9
17411	450	12.9	2250	2.0	13354	8.9
16370	500	15.7	2500	3.6	7200	8.5
15278	600	18.2	3000	4.8	13830	8.5
18157	400	12.5	2000	2.0	10600	8.5
18158	400	12.5	2000	2.0	10620	8.5
17770	400	13.0	2000	2.2	2860	8.5
15516	550	17.9	2750	4.7	2727	8.4
12001	950	17.9	4750	4.8	17249	8.2
12812	850	16.0	4250	4.0	17262	8.0
16932	450	14.6	2250	3.3	2816	7.9
15459	550	15.8	2750	4.0	1188	7.8
17921	400	13.2	2000	2.8	5880	7.7
17172	450	12.8	2250	2.7	8096	7.5
15449	550	15.8	2750	4.5	918	6.7
17295	450	14.7	2250	4.0	10802	6.7
16193	500	16.2	2500	4.8	2775	6.6
17171	450	12.8	2250	3.1	8074	6.6
18031	400	11.4	2000	2.5	8080	6.4
18032	400	11.4	2000	2.5	8100	6.4
18033	400	11.4	2000	2.5	8120	6.4
18034	400	11.4	2000	2.5	8140	6.4
16301	500	13.8	2500	3.8	5475	6.2
13904	700	15.3	3500	4.9	5460	5.6
17433	450	13.6	2250	4.7	13838	4.3
17281	450	14.1	2250	4.9	10494	4.3
16773	500	12.5	2500	4.2	17275	4.1
18491	400	11.4	2000	4.0	17280	3.4
18319	400	12.1	2000	4.8	13840	2.6
18030	400	11.4	2000	4.5	8060	2.4

Overall score = score_ratio - 2 * repetitive DNA content

Redundant probes

Putative probe ID	Length	Score ratio	Actual	%rep DNA	Distance	Overall
11674	950	30.6	4750	1.1	1880	28.5
11675	950	30.6	4750	1.1	1927	28.5
11676	950	30.6	4750	1.1	1974	28.5
11677	950	30.6	4750	1.1	2021	28.5
11678	950	30.6	4750	1.1	2068	28.5
11679	950	30.6	4750	1.1	2115	28.5
11680	950	30.6	4750	1.1	2162	28.5
11681	950	30.6	4750	1.1	2209	28.5
12059	900	29.2	4500	1.1	2250	27.0
12052	900	29.0	4500	1.1	1935	26.8
12053	900	29.0	4500	1.1	1980	26.8
12054	900	29.0	4500	1.1	2025	26.8
12055	900	29.0	4500	1.1	2070	26.8
12056	900	29.0	4500	1.1	2115	26.8
12057	900	29.0	4500	1.1	2160	26.8
12058	900	29.0	4500	1.1	2205	26.8
12448	850	27.4	4250	1.2	1974	25.1
12449	850	27.4	4250	1.2	2016	25.1
12450	850	27.4	4250	1.2	2058	25.1
12451	850	27.4	4250	1.2	2100	25.1
12452	850	27.4	4250	1.2	2142	25.1
12453	850	27.4	4250	1.2	2184	25.1
12454	850	27.4	4250	1.2	2226	25.1
12049	900	29.0	4500	2.3	1800	24.4
12874	800	25.8	4000	1.2	2040	23.3
12875	800	25.8	4000	1.2	2080	23.3
12876	800	25.8	4000	1.2	2120	23.3
12877	800	25.8	4000	1.2	2160	23.3
12878	800	25.8	4000	1.2	2200	23.3
12879	800	25.8	4000	1.2	2240	23.3
13323	750	24.2	3750	1.3	2072	21.5
13324	750	24.2	3750	1.3	2109	21.5
13325	750	24.2	3750	1.3	2146	21.5
13326	750	24.2	3750	1.3	2183	21.5
13327	750	24.2	3750	1.3	2220	21.5
12868	800	25.8	4000	2.6	1800	20.6
13809	700	22.6	3500	1.4	2135	19.7
13810	700	22.6	3500	1.4	2170	19.7
13811	700	22.6	3500	1.4	2205	19.7
13812	700	22.6	3500	1.4	2240	19.7
14326	650	21.0	3250	1.5	2176	17.9
14327	650	21.0	3250	1.5	2208	17.9
14328	650	21.0	3250	1.5	2240	17.9
14892	600	19.5	3000	1.7	2250	16.1
14891	600	19.4	3000	1.7	2220	16.0
13908	700	22.4	3500	4.4	5600	13.6
15482	550	17.7	2750	2.2	1809	13.4
14877	600	19.4	3000	3.5	1800	12.4
14314	650	21.0	3250	4.5	1792	12.0
15906	550	15.7	2750	2.2	13257	11.4
15167	600	18.8	3000	4.0	10500	10.8
16891	450	14.5	2250	2.2	1914	10.1
16892	450	14.5	2250	2.2	1936	10.1
16893	450	14.5	2250	2.2	1958	10.1
16894	450	14.5	2250	2.2	1980	10.1
16895	450	14.5	2250	2.2	2002	10.1
16896	450	14.5	2250	2.2	2024	10.1
16897	450	14.5	2250	2.2	2046	10.1
16898	450	14.5	2250	2.2	2068	10.1
16899	450	14.5	2250	2.2	2090	10.1
16900	450	14.5	2250	2.2	2112	10.1
16901	450	14.5	2250	2.2	2134	10.1
16902	450	14.5	2250	2.2	2156	10.1
16903	450	14.5	2250	2.2	2178	10.1
16904	450	14.5	2250	2.2	2200	10.1
16905	450	14.5	2250	2.2	2222	10.1
16906	450	14.5	2250	2.2	2244	10.1
15804	550	17.2	2750	3.8	10503	9.6
17725	400	12.9	2000	2.5	1960	7.9
17726	400	12.9	2000	2.5	1980	7.9
17727	400	12.9	2000	2.5	2000	7.9
17728	400	12.9	2000	2.5	2020	7.9
17729	400	12.9	2000	2.5	2040	7.9
17730	400	12.9	2000	2.5	2060	7.9
17731	400	12.9	2000	2.5	2080	7.9
17732	400	12.9	2000	2.5	2100	7.9
17733	400	12.9	2000	2.5	2120	7.9
17734	400	12.9	2000	2.5	2140	7.9
17735	400	12.9	2000	2.5	2160	7.9
17736	400	12.9	2000	2.5	2180	7.9
17737	400	12.9	2000	2.5	2200	7.9
17738	400	12.9	2000	2.5	2220	7.9
17739	400	12.9	2000	2.5	2240	7.9
16602	500	15.8	2500	4.2	13000	7.4
16119	500	14.4	2500	3.6	925	7.2
17053	450	13.6	2250	3.6	5478	6.4
16502	500	15.6	2500	4.8	10500	6.0
17395	450	14.2	2250	4.2	13002	5.8
17901	400	12.6	2000	3.5	5480	5.6
18152	400	12.5	2000	4.0	10500	4.5
16846	450	12.9	2250	4.2	924	4.5
17987	400	12.6	2000	4.5	7200	3.6

Overall score = score_ratio - 2 * repetitive DNA content