Automated design of genomic Southern blot probes
Mike DR Croning, David G Fricker, Noboru H Komiyama and Seth GN Grant
Design Case - ProbeDesign19 - back to list
Summary
./analyse_probe_search_results : Tue Feb 13 12:57:13 2007
Connected to host: host, as user: user Database : southern_blot_designs Fetched probe design: ProbeDesign19 assembly : NCBIM36 bias : 3prime chromosome : 16 id : 5 strand : 1 ------------- Design window length: 2461bp All jobs for probe design are successful - total: 35 Fetched conf : Exonerate mouse_NCBIM36 (id: 1) Genome file(s) at: /blastdb/Mouse/NCBIM36/genome/softmasked_dusted Fetched 684 putative probes to analyse Selection criteria to rank probes: Minimum score ratio : 10 (i.e. self-hit must score at least 10 times higher than the next best hit) Maximum percent repetitive bases: 5 Favour probes to the 3prime end of design window ------------------------ Putative probes without hits : 0 Putative probes with single_self_hit : 684/684 Putative probes that are unique : 8/684 Putative probes exceeding selection criteria : 301/684 (both unique and not unique) Putative probes with successfully-picked primers: 296/301 Identified 8 'redundant' probes exceeding selection criteria (but wholly contained by other probes, and higher repetitive DNA content)
Image
Unique (yellow), passed (green) and failed putative probes in the design window
Unique putative probes
Putative probe ID | Length | Actual | %rep DNA | Distance |
---|---|---|---|---|
5367 | 550 | 2750 | - | 1512 |
5368 | 550 | 2750 | - | 1539 |
5369 | 550 | 2750 | - | 1566 |
5443 | 500 | 2500 | - | 1525 |
5444 | 500 | 2500 | - | 1550 |
5445 | 500 | 2500 | - | 1575 |
5446 | 500 | 2500 | - | 1600 |
5447 | 500 | 2500 | - | 1625 |
Putative probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
4836 | 1200 | 38.7 | 6000 | - | 1260 | 38.7 |
4859 | 1150 | 37.1 | 5750 | - | 1254 | 37.1 |
4860 | 1150 | 37.1 | 5750 | - | 1311 | 37.1 |
4884 | 1100 | 35.5 | 5500 | - | 1265 | 35.5 |
4885 | 1100 | 35.5 | 5500 | - | 1320 | 35.5 |
4835 | 1200 | 38.7 | 6000 | 1.8 | 1200 | 35.2 |
4910 | 1050 | 33.9 | 5250 | - | 1248 | 33.9 |
4911 | 1050 | 33.9 | 5250 | - | 1300 | 33.9 |
4912 | 1050 | 33.9 | 5250 | - | 1352 | 33.9 |
4913 | 1050 | 33.9 | 5250 | - | 1404 | 33.9 |
4883 | 1100 | 35.5 | 5500 | 1.0 | 1210 | 33.5 |
4858 | 1150 | 37.1 | 5750 | 2.1 | 1197 | 32.9 |
4939 | 1000 | 32.3 | 5000 | - | 1250 | 32.3 |
4940 | 1000 | 32.3 | 5000 | - | 1300 | 32.3 |
4941 | 1000 | 32.3 | 5000 | - | 1350 | 32.3 |
4942 | 1000 | 32.3 | 5000 | - | 1400 | 32.3 |
4943 | 1000 | 32.3 | 5000 | - | 1450 | 32.3 |
4976 | 950 | 31.5 | 4750 | - | 1504 | 31.5 |
4914 | 1000 | 30.9 | 5000 | - | 0 | 30.9 |
4970 | 950 | 30.6 | 4750 | - | 1222 | 30.6 |
4971 | 950 | 30.6 | 4750 | - | 1269 | 30.6 |
4972 | 950 | 30.6 | 4750 | - | 1316 | 30.6 |
4973 | 950 | 30.6 | 4750 | - | 1363 | 30.6 |
4974 | 950 | 30.6 | 4750 | - | 1410 | 30.6 |
4975 | 950 | 30.6 | 4750 | - | 1457 | 30.6 |
5011 | 900 | 29.8 | 4500 | - | 1530 | 29.8 |
4944 | 950 | 29.3 | 4750 | - | 0 | 29.3 |
4945 | 950 | 29.3 | 4750 | - | 47 | 29.3 |
4909 | 1050 | 33.9 | 5250 | 2.4 | 1196 | 29.1 |
5005 | 900 | 29.0 | 4500 | - | 1260 | 29.0 |
5006 | 900 | 29.0 | 4500 | - | 1305 | 29.0 |
5007 | 900 | 29.0 | 4500 | - | 1350 | 29.0 |
5008 | 900 | 29.0 | 4500 | - | 1395 | 29.0 |
5009 | 900 | 29.0 | 4500 | - | 1440 | 29.0 |
5010 | 900 | 29.0 | 4500 | - | 1485 | 29.0 |
4814 | 1250 | 35.7 | 6250 | 3.4 | 1178 | 28.8 |
5048 | 850 | 28.1 | 4250 | - | 1512 | 28.1 |
5049 | 850 | 28.1 | 4250 | - | 1554 | 28.1 |
5050 | 850 | 28.1 | 4250 | - | 1596 | 28.1 |
4938 | 1000 | 32.3 | 5000 | 2.1 | 1200 | 28.1 |
4977 | 900 | 27.8 | 4500 | - | 0 | 27.8 |
4978 | 900 | 27.8 | 4500 | - | 45 | 27.8 |
4979 | 900 | 27.8 | 4500 | - | 90 | 27.8 |
5004 | 900 | 29.0 | 4500 | 0.7 | 1215 | 27.7 |
5042 | 850 | 27.4 | 4250 | - | 1260 | 27.4 |
5043 | 850 | 27.4 | 4250 | - | 1302 | 27.4 |
5044 | 850 | 27.4 | 4250 | - | 1344 | 27.4 |
5045 | 850 | 27.4 | 4250 | - | 1386 | 27.4 |
5046 | 850 | 27.4 | 4250 | - | 1428 | 27.4 |
5047 | 850 | 27.4 | 4250 | - | 1470 | 27.4 |
5041 | 850 | 27.4 | 4250 | 0.4 | 1218 | 26.7 |
5089 | 800 | 26.5 | 4000 | - | 1520 | 26.5 |
5090 | 800 | 26.5 | 4000 | - | 1560 | 26.5 |
5091 | 800 | 26.5 | 4000 | - | 1600 | 26.5 |
5092 | 800 | 26.5 | 4000 | - | 1640 | 26.5 |
5012 | 850 | 26.2 | 4250 | - | 0 | 26.2 |
5013 | 850 | 26.2 | 4250 | - | 42 | 26.2 |
5014 | 850 | 26.2 | 4250 | - | 84 | 26.2 |
5015 | 850 | 26.2 | 4250 | - | 126 | 26.2 |
5016 | 850 | 26.2 | 4250 | - | 168 | 26.2 |
5082 | 800 | 25.8 | 4000 | - | 1240 | 25.8 |
5083 | 800 | 25.8 | 4000 | - | 1280 | 25.8 |
5084 | 800 | 25.8 | 4000 | - | 1320 | 25.8 |
5085 | 800 | 25.8 | 4000 | - | 1360 | 25.8 |
5086 | 800 | 25.8 | 4000 | - | 1400 | 25.8 |
5087 | 800 | 25.8 | 4000 | - | 1440 | 25.8 |
5088 | 800 | 25.8 | 4000 | - | 1480 | 25.8 |
5134 | 750 | 24.8 | 3750 | - | 1517 | 24.8 |
5135 | 750 | 24.8 | 3750 | - | 1554 | 24.8 |
5136 | 750 | 24.8 | 3750 | - | 1591 | 24.8 |
5137 | 750 | 24.8 | 3750 | - | 1628 | 24.8 |
5138 | 750 | 24.8 | 3750 | - | 1665 | 24.8 |
5139 | 750 | 24.8 | 3750 | - | 1702 | 24.8 |
5051 | 800 | 24.7 | 4000 | - | 0 | 24.7 |
5052 | 800 | 24.7 | 4000 | - | 40 | 24.7 |
5053 | 800 | 24.7 | 4000 | - | 80 | 24.7 |
5054 | 800 | 24.7 | 4000 | - | 120 | 24.7 |
5055 | 800 | 24.7 | 4000 | - | 160 | 24.7 |
5056 | 800 | 24.7 | 4000 | - | 200 | 24.7 |
5126 | 750 | 24.2 | 3750 | - | 1221 | 24.2 |
5127 | 750 | 24.2 | 3750 | - | 1258 | 24.2 |
5128 | 750 | 24.2 | 3750 | - | 1295 | 24.2 |
5129 | 750 | 24.2 | 3750 | - | 1332 | 24.2 |
5130 | 750 | 24.2 | 3750 | - | 1369 | 24.2 |
5131 | 750 | 24.2 | 3750 | - | 1406 | 24.2 |
5132 | 750 | 24.2 | 3750 | - | 1443 | 24.2 |
5133 | 750 | 24.2 | 3750 | - | 1480 | 24.2 |
4980 | 900 | 27.8 | 4500 | 1.9 | 135 | 24.0 |
5183 | 700 | 23.2 | 3500 | - | 1505 | 23.2 |
5184 | 700 | 23.2 | 3500 | - | 1540 | 23.2 |
5185 | 700 | 23.2 | 3500 | - | 1575 | 23.2 |
5186 | 700 | 23.2 | 3500 | - | 1610 | 23.2 |
5187 | 700 | 23.2 | 3500 | - | 1645 | 23.2 |
5188 | 700 | 23.2 | 3500 | - | 1680 | 23.2 |
5189 | 700 | 23.2 | 3500 | - | 1715 | 23.2 |
5190 | 700 | 23.2 | 3500 | - | 1750 | 23.2 |
5093 | 750 | 23.1 | 3750 | - | 0 | 23.1 |
5094 | 750 | 23.1 | 3750 | - | 37 | 23.1 |
5095 | 750 | 23.1 | 3750 | - | 74 | 23.1 |
5096 | 750 | 23.1 | 3750 | - | 111 | 23.1 |
5097 | 750 | 23.1 | 3750 | - | 148 | 23.1 |
5098 | 750 | 23.1 | 3750 | - | 185 | 23.1 |
5099 | 750 | 23.1 | 3750 | - | 222 | 23.1 |
5100 | 750 | 23.1 | 3750 | - | 259 | 23.1 |
4886 | 1050 | 29.0 | 5250 | 3.0 | 0 | 22.9 |
5175 | 700 | 22.6 | 3500 | - | 1225 | 22.6 |
5176 | 700 | 22.6 | 3500 | - | 1260 | 22.6 |
5177 | 700 | 22.6 | 3500 | - | 1295 | 22.6 |
5178 | 700 | 22.6 | 3500 | - | 1330 | 22.6 |
5179 | 700 | 22.6 | 3500 | - | 1365 | 22.6 |
5180 | 700 | 22.6 | 3500 | - | 1400 | 22.6 |
5181 | 700 | 22.6 | 3500 | - | 1435 | 22.6 |
5182 | 700 | 22.6 | 3500 | - | 1470 | 22.6 |
5140 | 700 | 21.6 | 3500 | - | 0 | 21.6 |
5141 | 700 | 21.6 | 3500 | - | 35 | 21.6 |
5142 | 700 | 21.6 | 3500 | - | 70 | 21.6 |
5143 | 700 | 21.6 | 3500 | - | 105 | 21.6 |
5144 | 700 | 21.6 | 3500 | - | 140 | 21.6 |
5145 | 700 | 21.6 | 3500 | - | 175 | 21.6 |
5146 | 700 | 21.6 | 3500 | - | 210 | 21.6 |
5147 | 700 | 21.6 | 3500 | - | 245 | 21.6 |
5148 | 700 | 21.6 | 3500 | - | 280 | 21.6 |
5149 | 700 | 21.6 | 3500 | - | 315 | 21.6 |
5238 | 650 | 21.5 | 3250 | - | 1504 | 21.5 |
5239 | 650 | 21.5 | 3250 | - | 1536 | 21.5 |
5240 | 650 | 21.5 | 3250 | - | 1568 | 21.5 |
5241 | 650 | 21.5 | 3250 | - | 1600 | 21.5 |
5242 | 650 | 21.5 | 3250 | - | 1632 | 21.5 |
5243 | 650 | 21.5 | 3250 | - | 1664 | 21.5 |
5244 | 650 | 21.5 | 3250 | - | 1696 | 21.5 |
5245 | 650 | 21.5 | 3250 | - | 1728 | 21.5 |
5246 | 650 | 21.5 | 3250 | - | 1760 | 21.5 |
5247 | 650 | 21.5 | 3250 | - | 1792 | 21.5 |
5230 | 650 | 21.0 | 3250 | - | 1248 | 21.0 |
5231 | 650 | 21.0 | 3250 | - | 1280 | 21.0 |
5232 | 650 | 21.0 | 3250 | - | 1312 | 21.0 |
5233 | 650 | 21.0 | 3250 | - | 1344 | 21.0 |
5234 | 650 | 21.0 | 3250 | - | 1376 | 21.0 |
5235 | 650 | 21.0 | 3250 | - | 1408 | 21.0 |
5236 | 650 | 21.0 | 3250 | - | 1440 | 21.0 |
5237 | 650 | 21.0 | 3250 | - | 1472 | 21.0 |
4946 | 950 | 26.2 | 4750 | 2.7 | 94 | 20.8 |
5081 | 800 | 25.8 | 4000 | 2.6 | 1200 | 20.6 |
5191 | 650 | 20.1 | 3250 | - | 0 | 20.1 |
5192 | 650 | 20.1 | 3250 | - | 32 | 20.1 |
5193 | 650 | 20.1 | 3250 | - | 64 | 20.1 |
5194 | 650 | 20.1 | 3250 | - | 96 | 20.1 |
5195 | 650 | 20.1 | 3250 | - | 128 | 20.1 |
5196 | 650 | 20.1 | 3250 | - | 160 | 20.1 |
5197 | 650 | 20.1 | 3250 | - | 192 | 20.1 |
5198 | 650 | 20.1 | 3250 | - | 224 | 20.1 |
5199 | 650 | 20.1 | 3250 | - | 256 | 20.1 |
5200 | 650 | 20.1 | 3250 | - | 288 | 20.1 |
5201 | 650 | 20.1 | 3250 | - | 320 | 20.1 |
5202 | 650 | 20.1 | 3250 | - | 352 | 20.1 |
5299 | 600 | 19.9 | 3000 | - | 1530 | 19.9 |
5300 | 600 | 19.9 | 3000 | - | 1560 | 19.9 |
5301 | 600 | 19.9 | 3000 | - | 1590 | 19.9 |
5302 | 600 | 19.9 | 3000 | - | 1620 | 19.9 |
5303 | 600 | 19.9 | 3000 | - | 1650 | 19.9 |
5304 | 600 | 19.9 | 3000 | - | 1680 | 19.9 |
5305 | 600 | 19.9 | 3000 | - | 1710 | 19.9 |
5306 | 600 | 19.9 | 3000 | - | 1740 | 19.9 |
5307 | 600 | 19.9 | 3000 | - | 1770 | 19.9 |
5308 | 600 | 19.9 | 3000 | - | 1800 | 19.9 |
5309 | 600 | 19.9 | 3000 | - | 1830 | 19.9 |
5310 | 600 | 19.9 | 3000 | - | 1860 | 19.9 |
5229 | 650 | 21.0 | 3250 | 0.8 | 1216 | 19.4 |
5289 | 600 | 19.4 | 3000 | - | 1230 | 19.4 |
5290 | 600 | 19.4 | 3000 | - | 1260 | 19.4 |
5291 | 600 | 19.4 | 3000 | - | 1290 | 19.4 |
5292 | 600 | 19.4 | 3000 | - | 1320 | 19.4 |
5293 | 600 | 19.4 | 3000 | - | 1350 | 19.4 |
5294 | 600 | 19.4 | 3000 | - | 1380 | 19.4 |
5295 | 600 | 19.4 | 3000 | - | 1410 | 19.4 |
5296 | 600 | 19.4 | 3000 | - | 1440 | 19.4 |
5297 | 600 | 19.4 | 3000 | - | 1470 | 19.4 |
5298 | 600 | 19.4 | 3000 | - | 1500 | 19.4 |
5262 | 600 | 19.5 | 3000 | 0.3 | 420 | 18.8 |
5248 | 600 | 18.5 | 3000 | - | 0 | 18.5 |
5249 | 600 | 18.5 | 3000 | - | 30 | 18.5 |
5250 | 600 | 18.5 | 3000 | - | 60 | 18.5 |
5251 | 600 | 18.5 | 3000 | - | 90 | 18.5 |
5252 | 600 | 18.5 | 3000 | - | 120 | 18.5 |
5253 | 600 | 18.5 | 3000 | - | 150 | 18.5 |
5254 | 600 | 18.5 | 3000 | - | 180 | 18.5 |
5255 | 600 | 18.5 | 3000 | - | 210 | 18.5 |
5256 | 600 | 18.5 | 3000 | - | 240 | 18.5 |
5257 | 600 | 18.5 | 3000 | - | 270 | 18.5 |
5258 | 600 | 18.5 | 3000 | - | 300 | 18.5 |
5259 | 600 | 18.5 | 3000 | - | 330 | 18.5 |
5260 | 600 | 18.5 | 3000 | - | 360 | 18.5 |
5261 | 600 | 18.5 | 3000 | - | 390 | 18.5 |
5370 | 550 | 18.2 | 2750 | - | 1593 | 18.2 |
5371 | 550 | 18.2 | 2750 | - | 1620 | 18.2 |
5372 | 550 | 18.2 | 2750 | - | 1647 | 18.2 |
5373 | 550 | 18.2 | 2750 | - | 1674 | 18.2 |
5374 | 550 | 18.2 | 2750 | - | 1701 | 18.2 |
5375 | 550 | 18.2 | 2750 | - | 1728 | 18.2 |
5376 | 550 | 18.2 | 2750 | - | 1755 | 18.2 |
5377 | 550 | 18.2 | 2750 | - | 1782 | 18.2 |
5378 | 550 | 18.2 | 2750 | - | 1809 | 18.2 |
5379 | 550 | 18.2 | 2750 | - | 1836 | 18.2 |
5380 | 550 | 18.2 | 2750 | - | 1863 | 18.2 |
5381 | 550 | 18.2 | 2750 | - | 1890 | 18.2 |
5326 | 550 | 17.9 | 2750 | - | 405 | 17.9 |
5327 | 550 | 17.9 | 2750 | - | 432 | 17.9 |
5328 | 550 | 17.9 | 2750 | - | 459 | 17.9 |
5357 | 550 | 17.7 | 2750 | - | 1242 | 17.7 |
5358 | 550 | 17.7 | 2750 | - | 1269 | 17.7 |
5359 | 550 | 17.7 | 2750 | - | 1296 | 17.7 |
5360 | 550 | 17.7 | 2750 | - | 1323 | 17.7 |
5361 | 550 | 17.7 | 2750 | - | 1350 | 17.7 |
5362 | 550 | 17.7 | 2750 | - | 1377 | 17.7 |
5363 | 550 | 17.7 | 2750 | - | 1404 | 17.7 |
5364 | 550 | 17.7 | 2750 | - | 1431 | 17.7 |
5365 | 550 | 17.7 | 2750 | - | 1458 | 17.7 |
5366 | 550 | 17.7 | 2750 | - | 1485 | 17.7 |
5057 | 800 | 23.0 | 4000 | 2.8 | 240 | 17.5 |
5311 | 550 | 17.0 | 2750 | - | 0 | 17.0 |
5312 | 550 | 17.0 | 2750 | - | 27 | 17.0 |
5313 | 550 | 17.0 | 2750 | - | 54 | 17.0 |
5314 | 550 | 17.0 | 2750 | - | 81 | 17.0 |
5315 | 550 | 17.0 | 2750 | - | 108 | 17.0 |
5316 | 550 | 17.0 | 2750 | - | 135 | 17.0 |
5317 | 550 | 17.0 | 2750 | - | 162 | 17.0 |
5318 | 550 | 17.0 | 2750 | - | 189 | 17.0 |
5319 | 550 | 17.0 | 2750 | - | 216 | 17.0 |
5320 | 550 | 17.0 | 2750 | - | 243 | 17.0 |
5321 | 550 | 17.0 | 2750 | - | 270 | 17.0 |
5322 | 550 | 17.0 | 2750 | - | 297 | 17.0 |
5323 | 550 | 17.0 | 2750 | - | 324 | 17.0 |
5324 | 550 | 17.0 | 2750 | - | 351 | 17.0 |
5325 | 550 | 17.0 | 2750 | - | 378 | 17.0 |
5448 | 500 | 16.6 | 2500 | - | 1650 | 16.6 |
5449 | 500 | 16.6 | 2500 | - | 1675 | 16.6 |
5450 | 500 | 16.6 | 2500 | - | 1700 | 16.6 |
5451 | 500 | 16.6 | 2500 | - | 1725 | 16.6 |
5452 | 500 | 16.6 | 2500 | - | 1750 | 16.6 |
5453 | 500 | 16.6 | 2500 | - | 1775 | 16.6 |
5454 | 500 | 16.6 | 2500 | - | 1800 | 16.6 |
5455 | 500 | 16.6 | 2500 | - | 1825 | 16.6 |
5456 | 500 | 16.6 | 2500 | - | 1850 | 16.6 |
5457 | 500 | 16.6 | 2500 | - | 1875 | 16.6 |
5458 | 500 | 16.6 | 2500 | - | 1900 | 16.6 |
5459 | 500 | 16.6 | 2500 | - | 1925 | 16.6 |
5460 | 500 | 16.6 | 2500 | - | 1950 | 16.6 |
5398 | 500 | 16.2 | 2500 | - | 400 | 16.2 |
5399 | 500 | 16.2 | 2500 | - | 425 | 16.2 |
5400 | 500 | 16.2 | 2500 | - | 450 | 16.2 |
5401 | 500 | 16.2 | 2500 | - | 475 | 16.2 |
5402 | 500 | 16.2 | 2500 | - | 500 | 16.2 |
5431 | 500 | 16.1 | 2500 | - | 1225 | 16.1 |
5432 | 500 | 16.1 | 2500 | - | 1250 | 16.1 |
5433 | 500 | 16.1 | 2500 | - | 1275 | 16.1 |
5434 | 500 | 16.1 | 2500 | - | 1300 | 16.1 |
5435 | 500 | 16.1 | 2500 | - | 1325 | 16.1 |
5436 | 500 | 16.1 | 2500 | - | 1350 | 16.1 |
5437 | 500 | 16.1 | 2500 | - | 1375 | 16.1 |
5438 | 500 | 16.1 | 2500 | - | 1400 | 16.1 |
5439 | 500 | 16.1 | 2500 | - | 1425 | 16.1 |
5440 | 500 | 16.1 | 2500 | - | 1450 | 16.1 |
5441 | 500 | 16.1 | 2500 | - | 1475 | 16.1 |
5442 | 500 | 16.1 | 2500 | - | 1500 | 16.1 |
4969 | 950 | 25.7 | 4750 | 4.8 | 1175 | 16.0 |
5356 | 550 | 17.7 | 2750 | 1.1 | 1215 | 15.6 |
5382 | 500 | 15.4 | 2500 | - | 0 | 15.4 |
5383 | 500 | 15.4 | 2500 | - | 25 | 15.4 |
5384 | 500 | 15.4 | 2500 | - | 50 | 15.4 |
5385 | 500 | 15.4 | 2500 | - | 75 | 15.4 |
5386 | 500 | 15.4 | 2500 | - | 100 | 15.4 |
5387 | 500 | 15.4 | 2500 | - | 125 | 15.4 |
5388 | 500 | 15.4 | 2500 | - | 150 | 15.4 |
5389 | 500 | 15.4 | 2500 | - | 175 | 15.4 |
5390 | 500 | 15.4 | 2500 | - | 200 | 15.4 |
5391 | 500 | 15.4 | 2500 | - | 225 | 15.4 |
5392 | 500 | 15.4 | 2500 | - | 250 | 15.4 |
5393 | 500 | 15.4 | 2500 | - | 275 | 15.4 |
5394 | 500 | 15.4 | 2500 | - | 300 | 15.4 |
5395 | 500 | 15.4 | 2500 | - | 325 | 15.4 |
5396 | 500 | 15.4 | 2500 | - | 350 | 15.4 |
5397 | 500 | 15.4 | 2500 | - | 375 | 15.4 |
5203 | 650 | 20.1 | 3250 | 2.5 | 384 | 15.1 |
5403 | 500 | 16.2 | 2500 | 1.4 | 525 | 13.4 |
5017 | 850 | 19.9 | 4250 | 4.9 | 210 | 10.0 |
Overall score = score_ratio - 2 * repetitive DNA content
Redundant probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
4915 | 1000 | 27.6 | 5000 | 3.2 | 50 | 21.2 |
5174 | 700 | 22.6 | 3500 | 4.4 | 1190 | 13.7 |
5101 | 750 | 20.7 | 3750 | 3.7 | 296 | 13.3 |
5125 | 750 | 23.0 | 3750 | 4.9 | 1184 | 13.1 |
5288 | 600 | 19.4 | 3000 | 3.5 | 1200 | 12.4 |
5329 | 550 | 17.7 | 2750 | 3.3 | 486 | 11.2 |
5150 | 700 | 19.3 | 3500 | 4.6 | 350 | 10.2 |
5430 | 500 | 16.1 | 2500 | 4.2 | 1200 | 7.7 |
Overall score = score_ratio - 2 * repetitive DNA content