Automated design of genomic Southern blot probes
Mike DR Croning, David G Fricker, Noboru H Komiyama and Seth GN Grant
Design Case - ProbeDesign15 - back to list
Summary
./analyse_probe_search_results : Tue Feb 20 17:43:19 2007
Connected to host: host, as user: user Database : southern_blot_designs Fetched probe design: ProbeDesign15 assembly : NCBIM36 bias : 3prime chromosome : 16 id : 10 strand : 1 ------------- Design window length: 2460bp All jobs for probe design are successful - total: 35 Fetched conf : Exonerate mouse_NCBIM36 (id: 1) Genome file(s) at: /blastdb/Mouse/NCBIM36/genome/softmasked_dusted Fetched 683 putative probes to analyse Selection criteria to rank probes: Minimum score ratio : 10 (i.e. self-hit must score at least 10 times higher than the next best hit) Maximum percent repetitive bases: 5 Favour probes to the 3prime end of design window ------------------------ Putative probes without hits : 0 Putative probes with single_self_hit : 683/683 Putative probes that are unique : 7/683 Putative probes exceeding selection criteria : 299/683 (both unique and not unique) Putative probes with successfully-picked primers: 294/299 Identified 7 'redundant' probes exceeding selection criteria (but wholly contained by other probes, and higher repetitive DNA content)
Image
Unique (yellow), passed (green) and failed putative probes in the design window
Unique putative probes
Putative probe ID | Length | Actual | %rep DNA | Distance |
---|---|---|---|---|
8754 | 550 | 2750 | - | 1512 |
8755 | 550 | 2750 | - | 1539 |
8756 | 550 | 2750 | - | 1566 |
8830 | 500 | 2500 | - | 1525 |
8831 | 500 | 2500 | - | 1550 |
8832 | 500 | 2500 | - | 1575 |
8833 | 500 | 2500 | - | 1600 |
Putative probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
8224 | 1200 | 38.7 | 6000 | - | 1260 | 38.7 |
8247 | 1150 | 37.1 | 5750 | - | 1254 | 37.1 |
8271 | 1100 | 35.5 | 5500 | - | 1265 | 35.5 |
8272 | 1100 | 35.5 | 5500 | - | 1320 | 35.5 |
8223 | 1200 | 38.7 | 6000 | 1.7 | 1200 | 35.4 |
8297 | 1050 | 33.9 | 5250 | - | 1248 | 33.9 |
8298 | 1050 | 33.9 | 5250 | - | 1300 | 33.9 |
8299 | 1050 | 33.9 | 5250 | - | 1352 | 33.9 |
8300 | 1050 | 33.9 | 5250 | - | 1404 | 33.9 |
8270 | 1100 | 35.5 | 5500 | 0.9 | 1210 | 33.7 |
8246 | 1150 | 37.1 | 5750 | 2.0 | 1197 | 33.1 |
8326 | 1000 | 32.3 | 5000 | - | 1250 | 32.3 |
8327 | 1000 | 32.3 | 5000 | - | 1300 | 32.3 |
8328 | 1000 | 32.3 | 5000 | - | 1350 | 32.3 |
8329 | 1000 | 32.3 | 5000 | - | 1400 | 32.3 |
8330 | 1000 | 32.3 | 5000 | - | 1450 | 32.3 |
8363 | 950 | 31.5 | 4750 | - | 1504 | 31.5 |
8301 | 1000 | 30.9 | 5000 | - | 0 | 30.9 |
8357 | 950 | 30.6 | 4750 | - | 1222 | 30.6 |
8358 | 950 | 30.6 | 4750 | - | 1269 | 30.6 |
8359 | 950 | 30.6 | 4750 | - | 1316 | 30.6 |
8360 | 950 | 30.6 | 4750 | - | 1363 | 30.6 |
8361 | 950 | 30.6 | 4750 | - | 1410 | 30.6 |
8362 | 950 | 30.6 | 4750 | - | 1457 | 30.6 |
8202 | 1250 | 36.8 | 6250 | 3.4 | 1178 | 30.0 |
8398 | 900 | 29.8 | 4500 | - | 1530 | 29.8 |
8331 | 950 | 29.3 | 4750 | - | 0 | 29.3 |
8332 | 950 | 29.3 | 4750 | - | 47 | 29.3 |
8296 | 1050 | 33.9 | 5250 | 2.3 | 1196 | 29.3 |
8392 | 900 | 29.0 | 4500 | - | 1260 | 29.0 |
8393 | 900 | 29.0 | 4500 | - | 1305 | 29.0 |
8394 | 900 | 29.0 | 4500 | - | 1350 | 29.0 |
8395 | 900 | 29.0 | 4500 | - | 1395 | 29.0 |
8396 | 900 | 29.0 | 4500 | - | 1440 | 29.0 |
8397 | 900 | 29.0 | 4500 | - | 1485 | 29.0 |
8325 | 1000 | 32.3 | 5000 | 2.0 | 1200 | 28.3 |
8435 | 850 | 28.1 | 4250 | - | 1512 | 28.1 |
8436 | 850 | 28.1 | 4250 | - | 1554 | 28.1 |
8437 | 850 | 28.1 | 4250 | - | 1596 | 28.1 |
8391 | 900 | 29.0 | 4500 | 0.6 | 1215 | 27.9 |
8364 | 900 | 27.8 | 4500 | - | 0 | 27.8 |
8365 | 900 | 27.8 | 4500 | - | 45 | 27.8 |
8366 | 900 | 27.8 | 4500 | - | 90 | 27.8 |
8429 | 850 | 27.4 | 4250 | - | 1260 | 27.4 |
8430 | 850 | 27.4 | 4250 | - | 1302 | 27.4 |
8431 | 850 | 27.4 | 4250 | - | 1344 | 27.4 |
8432 | 850 | 27.4 | 4250 | - | 1386 | 27.4 |
8433 | 850 | 27.4 | 4250 | - | 1428 | 27.4 |
8434 | 850 | 27.4 | 4250 | - | 1470 | 27.4 |
8428 | 850 | 27.4 | 4250 | 0.2 | 1218 | 26.9 |
8476 | 800 | 26.5 | 4000 | - | 1520 | 26.5 |
8477 | 800 | 26.5 | 4000 | - | 1560 | 26.5 |
8478 | 800 | 26.5 | 4000 | - | 1600 | 26.5 |
8479 | 800 | 26.5 | 4000 | - | 1640 | 26.5 |
8399 | 850 | 26.2 | 4250 | - | 0 | 26.2 |
8400 | 850 | 26.2 | 4250 | - | 42 | 26.2 |
8401 | 850 | 26.2 | 4250 | - | 84 | 26.2 |
8402 | 850 | 26.2 | 4250 | - | 126 | 26.2 |
8403 | 850 | 26.2 | 4250 | 0.1 | 168 | 26.0 |
8469 | 800 | 25.8 | 4000 | - | 1240 | 25.8 |
8470 | 800 | 25.8 | 4000 | - | 1280 | 25.8 |
8471 | 800 | 25.8 | 4000 | - | 1320 | 25.8 |
8472 | 800 | 25.8 | 4000 | - | 1360 | 25.8 |
8473 | 800 | 25.8 | 4000 | - | 1400 | 25.8 |
8474 | 800 | 25.8 | 4000 | - | 1440 | 25.8 |
8475 | 800 | 25.8 | 4000 | - | 1480 | 25.8 |
8521 | 750 | 24.8 | 3750 | - | 1517 | 24.8 |
8522 | 750 | 24.8 | 3750 | - | 1554 | 24.8 |
8523 | 750 | 24.8 | 3750 | - | 1591 | 24.8 |
8524 | 750 | 24.8 | 3750 | - | 1628 | 24.8 |
8525 | 750 | 24.8 | 3750 | - | 1665 | 24.8 |
8526 | 750 | 24.8 | 3750 | - | 1702 | 24.8 |
8438 | 800 | 24.7 | 4000 | - | 0 | 24.7 |
8439 | 800 | 24.7 | 4000 | - | 40 | 24.7 |
8440 | 800 | 24.7 | 4000 | - | 80 | 24.7 |
8441 | 800 | 24.7 | 4000 | - | 120 | 24.7 |
8442 | 800 | 24.7 | 4000 | - | 160 | 24.7 |
8443 | 800 | 24.7 | 4000 | - | 200 | 24.7 |
8513 | 750 | 24.2 | 3750 | - | 1221 | 24.2 |
8514 | 750 | 24.2 | 3750 | - | 1258 | 24.2 |
8515 | 750 | 24.2 | 3750 | - | 1295 | 24.2 |
8516 | 750 | 24.2 | 3750 | - | 1332 | 24.2 |
8517 | 750 | 24.2 | 3750 | - | 1369 | 24.2 |
8518 | 750 | 24.2 | 3750 | - | 1406 | 24.2 |
8519 | 750 | 24.2 | 3750 | - | 1443 | 24.2 |
8520 | 750 | 24.2 | 3750 | - | 1480 | 24.2 |
8367 | 900 | 27.8 | 4500 | 2.0 | 135 | 23.8 |
8570 | 700 | 23.2 | 3500 | - | 1505 | 23.2 |
8571 | 700 | 23.2 | 3500 | - | 1540 | 23.2 |
8572 | 700 | 23.2 | 3500 | - | 1575 | 23.2 |
8573 | 700 | 23.2 | 3500 | - | 1610 | 23.2 |
8574 | 700 | 23.2 | 3500 | - | 1645 | 23.2 |
8575 | 700 | 23.2 | 3500 | - | 1680 | 23.2 |
8576 | 700 | 23.2 | 3500 | - | 1715 | 23.2 |
8577 | 700 | 23.2 | 3500 | - | 1750 | 23.2 |
8480 | 750 | 23.1 | 3750 | - | 0 | 23.1 |
8481 | 750 | 23.1 | 3750 | - | 37 | 23.1 |
8482 | 750 | 23.1 | 3750 | - | 74 | 23.1 |
8483 | 750 | 23.1 | 3750 | - | 111 | 23.1 |
8484 | 750 | 23.1 | 3750 | - | 148 | 23.1 |
8485 | 750 | 23.1 | 3750 | - | 185 | 23.1 |
8486 | 750 | 23.1 | 3750 | - | 222 | 23.1 |
8487 | 750 | 23.1 | 3750 | - | 259 | 23.1 |
8273 | 1050 | 29.0 | 5250 | 3.1 | 0 | 22.7 |
8562 | 700 | 22.6 | 3500 | - | 1225 | 22.6 |
8563 | 700 | 22.6 | 3500 | - | 1260 | 22.6 |
8564 | 700 | 22.6 | 3500 | - | 1295 | 22.6 |
8565 | 700 | 22.6 | 3500 | - | 1330 | 22.6 |
8566 | 700 | 22.6 | 3500 | - | 1365 | 22.6 |
8567 | 700 | 22.6 | 3500 | - | 1400 | 22.6 |
8568 | 700 | 22.6 | 3500 | - | 1435 | 22.6 |
8569 | 700 | 22.6 | 3500 | - | 1470 | 22.6 |
8527 | 700 | 21.6 | 3500 | - | 0 | 21.6 |
8528 | 700 | 21.6 | 3500 | - | 35 | 21.6 |
8529 | 700 | 21.6 | 3500 | - | 70 | 21.6 |
8530 | 700 | 21.6 | 3500 | - | 105 | 21.6 |
8531 | 700 | 21.6 | 3500 | - | 140 | 21.6 |
8532 | 700 | 21.6 | 3500 | - | 175 | 21.6 |
8533 | 700 | 21.6 | 3500 | - | 210 | 21.6 |
8534 | 700 | 21.6 | 3500 | - | 245 | 21.6 |
8535 | 700 | 21.6 | 3500 | - | 280 | 21.6 |
8536 | 700 | 21.6 | 3500 | - | 315 | 21.6 |
8625 | 650 | 21.5 | 3250 | - | 1504 | 21.5 |
8626 | 650 | 21.5 | 3250 | - | 1536 | 21.5 |
8627 | 650 | 21.5 | 3250 | - | 1568 | 21.5 |
8628 | 650 | 21.5 | 3250 | - | 1600 | 21.5 |
8629 | 650 | 21.5 | 3250 | - | 1632 | 21.5 |
8630 | 650 | 21.5 | 3250 | - | 1664 | 21.5 |
8631 | 650 | 21.5 | 3250 | - | 1696 | 21.5 |
8632 | 650 | 21.5 | 3250 | - | 1728 | 21.5 |
8633 | 650 | 21.5 | 3250 | - | 1760 | 21.5 |
8634 | 650 | 21.5 | 3250 | - | 1792 | 21.5 |
8617 | 650 | 21.0 | 3250 | - | 1248 | 21.0 |
8618 | 650 | 21.0 | 3250 | - | 1280 | 21.0 |
8619 | 650 | 21.0 | 3250 | - | 1312 | 21.0 |
8620 | 650 | 21.0 | 3250 | - | 1344 | 21.0 |
8621 | 650 | 21.0 | 3250 | - | 1376 | 21.0 |
8622 | 650 | 21.0 | 3250 | - | 1408 | 21.0 |
8623 | 650 | 21.0 | 3250 | - | 1440 | 21.0 |
8624 | 650 | 21.0 | 3250 | - | 1472 | 21.0 |
8468 | 800 | 25.8 | 4000 | 2.5 | 1200 | 20.8 |
8333 | 950 | 26.2 | 4750 | 2.8 | 94 | 20.6 |
8578 | 650 | 20.1 | 3250 | - | 0 | 20.1 |
8579 | 650 | 20.1 | 3250 | - | 32 | 20.1 |
8580 | 650 | 20.1 | 3250 | - | 64 | 20.1 |
8581 | 650 | 20.1 | 3250 | - | 96 | 20.1 |
8582 | 650 | 20.1 | 3250 | - | 128 | 20.1 |
8583 | 650 | 20.1 | 3250 | - | 160 | 20.1 |
8584 | 650 | 20.1 | 3250 | - | 192 | 20.1 |
8585 | 650 | 20.1 | 3250 | - | 224 | 20.1 |
8586 | 650 | 20.1 | 3250 | - | 256 | 20.1 |
8587 | 650 | 20.1 | 3250 | - | 288 | 20.1 |
8588 | 650 | 20.1 | 3250 | - | 320 | 20.1 |
8589 | 650 | 20.1 | 3250 | - | 352 | 20.1 |
8686 | 600 | 19.9 | 3000 | - | 1530 | 19.9 |
8687 | 600 | 19.9 | 3000 | - | 1560 | 19.9 |
8688 | 600 | 19.9 | 3000 | - | 1590 | 19.9 |
8689 | 600 | 19.9 | 3000 | - | 1620 | 19.9 |
8690 | 600 | 19.9 | 3000 | - | 1650 | 19.9 |
8691 | 600 | 19.9 | 3000 | - | 1680 | 19.9 |
8692 | 600 | 19.9 | 3000 | - | 1710 | 19.9 |
8693 | 600 | 19.9 | 3000 | - | 1740 | 19.9 |
8694 | 600 | 19.9 | 3000 | - | 1770 | 19.9 |
8695 | 600 | 19.9 | 3000 | - | 1800 | 19.9 |
8696 | 600 | 19.9 | 3000 | - | 1830 | 19.9 |
8697 | 600 | 19.9 | 3000 | - | 1860 | 19.9 |
8616 | 650 | 21.0 | 3250 | 0.6 | 1216 | 19.7 |
8676 | 600 | 19.4 | 3000 | - | 1230 | 19.4 |
8677 | 600 | 19.4 | 3000 | - | 1260 | 19.4 |
8678 | 600 | 19.4 | 3000 | - | 1290 | 19.4 |
8679 | 600 | 19.4 | 3000 | - | 1320 | 19.4 |
8680 | 600 | 19.4 | 3000 | - | 1350 | 19.4 |
8681 | 600 | 19.4 | 3000 | - | 1380 | 19.4 |
8682 | 600 | 19.4 | 3000 | - | 1410 | 19.4 |
8683 | 600 | 19.4 | 3000 | - | 1440 | 19.4 |
8684 | 600 | 19.4 | 3000 | - | 1470 | 19.4 |
8685 | 600 | 19.4 | 3000 | - | 1500 | 19.4 |
8635 | 600 | 18.5 | 3000 | - | 0 | 18.5 |
8636 | 600 | 18.5 | 3000 | - | 30 | 18.5 |
8637 | 600 | 18.5 | 3000 | - | 60 | 18.5 |
8638 | 600 | 18.5 | 3000 | - | 90 | 18.5 |
8639 | 600 | 18.5 | 3000 | - | 120 | 18.5 |
8640 | 600 | 18.5 | 3000 | - | 150 | 18.5 |
8641 | 600 | 18.5 | 3000 | - | 180 | 18.5 |
8642 | 600 | 18.5 | 3000 | - | 210 | 18.5 |
8643 | 600 | 18.5 | 3000 | - | 240 | 18.5 |
8644 | 600 | 18.5 | 3000 | - | 270 | 18.5 |
8645 | 600 | 18.5 | 3000 | - | 300 | 18.5 |
8646 | 600 | 18.5 | 3000 | - | 330 | 18.5 |
8647 | 600 | 18.5 | 3000 | - | 360 | 18.5 |
8648 | 600 | 18.5 | 3000 | - | 390 | 18.5 |
8649 | 600 | 19.5 | 3000 | 0.5 | 420 | 18.5 |
8757 | 550 | 18.2 | 2750 | - | 1593 | 18.2 |
8758 | 550 | 18.2 | 2750 | - | 1620 | 18.2 |
8759 | 550 | 18.2 | 2750 | - | 1647 | 18.2 |
8760 | 550 | 18.2 | 2750 | - | 1674 | 18.2 |
8761 | 550 | 18.2 | 2750 | - | 1701 | 18.2 |
8762 | 550 | 18.2 | 2750 | - | 1728 | 18.2 |
8763 | 550 | 18.2 | 2750 | - | 1755 | 18.2 |
8764 | 550 | 18.2 | 2750 | - | 1782 | 18.2 |
8765 | 550 | 18.2 | 2750 | - | 1809 | 18.2 |
8766 | 550 | 18.2 | 2750 | - | 1836 | 18.2 |
8767 | 550 | 18.2 | 2750 | - | 1863 | 18.2 |
8768 | 550 | 18.2 | 2750 | - | 1890 | 18.2 |
8713 | 550 | 17.9 | 2750 | - | 405 | 17.9 |
8714 | 550 | 17.9 | 2750 | - | 432 | 17.9 |
8715 | 550 | 17.9 | 2750 | - | 459 | 17.9 |
8744 | 550 | 17.7 | 2750 | - | 1242 | 17.7 |
8745 | 550 | 17.7 | 2750 | - | 1269 | 17.7 |
8746 | 550 | 17.7 | 2750 | - | 1296 | 17.7 |
8747 | 550 | 17.7 | 2750 | - | 1323 | 17.7 |
8748 | 550 | 17.7 | 2750 | - | 1350 | 17.7 |
8749 | 550 | 17.7 | 2750 | - | 1377 | 17.7 |
8750 | 550 | 17.7 | 2750 | - | 1404 | 17.7 |
8751 | 550 | 17.7 | 2750 | - | 1431 | 17.7 |
8752 | 550 | 17.7 | 2750 | - | 1458 | 17.7 |
8753 | 550 | 17.7 | 2750 | - | 1485 | 17.7 |
8698 | 550 | 17.0 | 2750 | - | 0 | 17.0 |
8699 | 550 | 17.0 | 2750 | - | 27 | 17.0 |
8700 | 550 | 17.0 | 2750 | - | 54 | 17.0 |
8701 | 550 | 17.0 | 2750 | - | 81 | 17.0 |
8702 | 550 | 17.0 | 2750 | - | 108 | 17.0 |
8703 | 550 | 17.0 | 2750 | - | 135 | 17.0 |
8704 | 550 | 17.0 | 2750 | - | 162 | 17.0 |
8705 | 550 | 17.0 | 2750 | - | 189 | 17.0 |
8706 | 550 | 17.0 | 2750 | - | 216 | 17.0 |
8707 | 550 | 17.0 | 2750 | - | 243 | 17.0 |
8708 | 550 | 17.0 | 2750 | - | 270 | 17.0 |
8709 | 550 | 17.0 | 2750 | - | 297 | 17.0 |
8710 | 550 | 17.0 | 2750 | - | 324 | 17.0 |
8711 | 550 | 17.0 | 2750 | - | 351 | 17.0 |
8712 | 550 | 17.0 | 2750 | - | 378 | 17.0 |
8834 | 500 | 16.7 | 2500 | - | 1625 | 16.7 |
8444 | 800 | 22.3 | 4000 | 2.9 | 240 | 16.6 |
8835 | 500 | 16.6 | 2500 | - | 1650 | 16.6 |
8836 | 500 | 16.6 | 2500 | - | 1675 | 16.6 |
8837 | 500 | 16.6 | 2500 | - | 1700 | 16.6 |
8838 | 500 | 16.6 | 2500 | - | 1725 | 16.6 |
8839 | 500 | 16.6 | 2500 | - | 1750 | 16.6 |
8840 | 500 | 16.6 | 2500 | - | 1775 | 16.6 |
8841 | 500 | 16.6 | 2500 | - | 1800 | 16.6 |
8842 | 500 | 16.6 | 2500 | - | 1825 | 16.6 |
8843 | 500 | 16.6 | 2500 | - | 1850 | 16.6 |
8844 | 500 | 16.6 | 2500 | - | 1875 | 16.6 |
8845 | 500 | 16.6 | 2500 | - | 1900 | 16.6 |
8846 | 500 | 16.6 | 2500 | - | 1925 | 16.6 |
8847 | 500 | 16.6 | 2500 | - | 1950 | 16.6 |
8785 | 500 | 16.2 | 2500 | - | 400 | 16.2 |
8786 | 500 | 16.2 | 2500 | - | 425 | 16.2 |
8787 | 500 | 16.2 | 2500 | - | 450 | 16.2 |
8788 | 500 | 16.2 | 2500 | - | 475 | 16.2 |
8789 | 500 | 16.2 | 2500 | - | 500 | 16.2 |
8356 | 950 | 25.7 | 4750 | 4.7 | 1175 | 16.2 |
8818 | 500 | 16.1 | 2500 | - | 1225 | 16.1 |
8819 | 500 | 16.1 | 2500 | - | 1250 | 16.1 |
8820 | 500 | 16.1 | 2500 | - | 1275 | 16.1 |
8821 | 500 | 16.1 | 2500 | - | 1300 | 16.1 |
8822 | 500 | 16.1 | 2500 | - | 1325 | 16.1 |
8823 | 500 | 16.1 | 2500 | - | 1350 | 16.1 |
8824 | 500 | 16.1 | 2500 | - | 1375 | 16.1 |
8825 | 500 | 16.1 | 2500 | - | 1400 | 16.1 |
8826 | 500 | 16.1 | 2500 | - | 1425 | 16.1 |
8827 | 500 | 16.1 | 2500 | - | 1450 | 16.1 |
8828 | 500 | 16.1 | 2500 | - | 1475 | 16.1 |
8829 | 500 | 16.1 | 2500 | - | 1500 | 16.1 |
8743 | 550 | 17.7 | 2750 | 0.9 | 1215 | 15.9 |
8769 | 500 | 15.4 | 2500 | - | 0 | 15.4 |
8770 | 500 | 15.4 | 2500 | - | 25 | 15.4 |
8771 | 500 | 15.4 | 2500 | - | 50 | 15.4 |
8772 | 500 | 15.4 | 2500 | - | 75 | 15.4 |
8773 | 500 | 15.4 | 2500 | - | 100 | 15.4 |
8774 | 500 | 15.4 | 2500 | - | 125 | 15.4 |
8775 | 500 | 15.4 | 2500 | - | 150 | 15.4 |
8776 | 500 | 15.4 | 2500 | - | 175 | 15.4 |
8777 | 500 | 15.4 | 2500 | - | 200 | 15.4 |
8778 | 500 | 15.4 | 2500 | - | 225 | 15.4 |
8779 | 500 | 15.4 | 2500 | - | 250 | 15.4 |
8780 | 500 | 15.4 | 2500 | - | 275 | 15.4 |
8781 | 500 | 15.4 | 2500 | - | 300 | 15.4 |
8782 | 500 | 15.4 | 2500 | - | 325 | 15.4 |
8783 | 500 | 15.4 | 2500 | - | 350 | 15.4 |
8784 | 500 | 15.4 | 2500 | - | 375 | 15.4 |
8590 | 650 | 20.1 | 3250 | 2.6 | 384 | 14.8 |
8790 | 500 | 16.2 | 2500 | 1.6 | 525 | 13.0 |
8675 | 600 | 19.4 | 3000 | 3.3 | 1200 | 12.7 |
Overall score = score_ratio - 2 * repetitive DNA content
Redundant probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
8302 | 1000 | 27.6 | 5000 | 3.3 | 50 | 21.0 |
8561 | 700 | 22.6 | 3500 | 4.3 | 1190 | 14.0 |
8512 | 750 | 23.0 | 3750 | 4.8 | 1184 | 13.4 |
8488 | 750 | 20.7 | 3750 | 3.9 | 296 | 13.0 |
8716 | 550 | 17.2 | 2750 | 3.5 | 486 | 10.3 |
8537 | 700 | 19.3 | 3500 | 4.7 | 350 | 9.9 |
8817 | 500 | 16.1 | 2500 | 4.0 | 1200 | 8.1 |
Overall score = score_ratio - 2 * repetitive DNA content