Automated design of genomic Southern blot probes
Mike DR Croning, David G Fricker, Noboru H Komiyama and Seth GN Grant
Design Case - ProbeDesign109 - back to list
Summary
./analyse_probe_search_results : Fri Feb 17 09:53:40 2006
Connected to host: host, as user: user Database : southern_blot_designs Fetched probe design: ProbeDesign109 assembly : NCBIM34 bias : 3prime chromosome : 5 id : 105 strand : 1 ------------- Design window length: 2501bp All jobs for probe design are successful - total: 35 Fetched conf : Exonerate mouse_NCBIM34 (id: 1) Genome file(s) at: /blastdb/Mouse/NCBIM34/softmasked_dusted Fetched 700 putative probes to analyse Selection criteria to rank probes: Minimum score ratio : 10 (i.e. self-hit must score at least 10 times higher than the next best hit) Maximum percent repetitive bases: 5 Favour probes to the 3prime end of design window ------------------------ Putative probes without hits : 0 Putative probes with single_self_hit : 700/700 Putative probes that are unique : 79/700 Putative probes exceeding selection criteria : 503/700 (both unique and not unique) Putative probes with successfully-picked primers: 497/503 Identified 3 'redundant' probes exceeding selection criteria (but wholly contained by other probes, and higher repetitive DNA content)
Image
Unique (yellow), passed (green) and failed putative probes in the design window
Unique putative probes
Putative probe ID | Length | Actual | %rep DNA | Distance |
---|---|---|---|---|
100198 | 950 | 4750 | - | 1551 |
100234 | 900 | 4500 | - | 1575 |
100272 | 850 | 4250 | - | 1554 |
100273 | 850 | 4250 | - | 1596 |
100274 | 850 | 4250 | - | 1638 |
100314 | 800 | 4000 | - | 1560 |
100315 | 800 | 4000 | - | 1600 |
100316 | 800 | 4000 | - | 1640 |
100317 | 800 | 4000 | - | 1680 |
100360 | 750 | 3750 | - | 1554 |
100361 | 750 | 3750 | - | 1591 |
100362 | 750 | 3750 | - | 1628 |
100363 | 750 | 3750 | - | 1665 |
100364 | 750 | 3750 | - | 1702 |
100365 | 750 | 3750 | - | 1739 |
100410 | 700 | 3500 | - | 1540 |
100411 | 700 | 3500 | - | 1575 |
100412 | 700 | 3500 | - | 1610 |
100413 | 700 | 3500 | - | 1645 |
100414 | 700 | 3500 | - | 1680 |
100415 | 700 | 3500 | - | 1715 |
100416 | 700 | 3500 | - | 1750 |
100417 | 700 | 3500 | - | 1785 |
100467 | 650 | 3250 | - | 1568 |
100468 | 650 | 3250 | - | 1600 |
100469 | 650 | 3250 | - | 1632 |
100470 | 650 | 3250 | - | 1664 |
100471 | 650 | 3250 | - | 1696 |
100472 | 650 | 3250 | - | 1728 |
100473 | 650 | 3250 | - | 1760 |
100474 | 650 | 3250 | - | 1792 |
100475 | 650 | 3250 | - | 1824 |
100528 | 600 | 3000 | - | 1560 |
100529 | 600 | 3000 | - | 1590 |
100530 | 600 | 3000 | - | 1620 |
100531 | 600 | 3000 | - | 1650 |
100532 | 600 | 3000 | - | 1680 |
100533 | 600 | 3000 | - | 1710 |
100534 | 600 | 3000 | - | 1740 |
100535 | 600 | 3000 | - | 1770 |
100536 | 600 | 3000 | - | 1800 |
100537 | 600 | 3000 | - | 1830 |
100538 | 600 | 3000 | - | 1860 |
100539 | 600 | 3000 | - | 1890 |
100597 | 550 | 2750 | - | 1539 |
100598 | 550 | 2750 | - | 1566 |
100599 | 550 | 2750 | - | 1593 |
100600 | 550 | 2750 | - | 1620 |
100601 | 550 | 2750 | - | 1647 |
100602 | 550 | 2750 | - | 1674 |
100603 | 550 | 2750 | - | 1701 |
100604 | 550 | 2750 | - | 1728 |
100605 | 550 | 2750 | - | 1755 |
100606 | 550 | 2750 | - | 1782 |
100607 | 550 | 2750 | - | 1809 |
100608 | 550 | 2750 | - | 1836 |
100609 | 550 | 2750 | - | 1863 |
100610 | 550 | 2750 | - | 1890 |
100611 | 550 | 2750 | - | 1917 |
100612 | 550 | 2750 | - | 1944 |
100675 | 500 | 2500 | - | 1550 |
100676 | 500 | 2500 | - | 1575 |
100677 | 500 | 2500 | - | 1600 |
100678 | 500 | 2500 | - | 1625 |
100679 | 500 | 2500 | - | 1650 |
100680 | 500 | 2500 | - | 1675 |
100681 | 500 | 2500 | - | 1700 |
100682 | 500 | 2500 | - | 1725 |
100683 | 500 | 2500 | - | 1750 |
100684 | 500 | 2500 | - | 1775 |
100685 | 500 | 2500 | - | 1800 |
100686 | 500 | 2500 | - | 1825 |
100687 | 500 | 2500 | - | 1850 |
100688 | 500 | 2500 | - | 1875 |
100689 | 500 | 2500 | - | 1900 |
100690 | 500 | 2500 | - | 1925 |
100691 | 500 | 2500 | - | 1950 |
100692 | 500 | 2500 | - | 1975 |
100693 | 500 | 2500 | - | 2000 |
Putative probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
100002 | 1300 | 38.7 | 6500 | - | 520 | 38.7 |
100003 | 1300 | 38.7 | 6500 | - | 585 | 38.7 |
100004 | 1300 | 38.7 | 6500 | - | 650 | 38.7 |
100005 | 1300 | 38.7 | 6500 | - | 715 | 38.7 |
100006 | 1300 | 38.7 | 6500 | - | 780 | 38.7 |
100007 | 1300 | 38.7 | 6500 | - | 845 | 38.7 |
100008 | 1300 | 38.7 | 6500 | - | 910 | 38.7 |
100009 | 1300 | 38.7 | 6500 | - | 975 | 38.7 |
100010 | 1300 | 38.7 | 6500 | - | 1040 | 38.7 |
100011 | 1300 | 38.7 | 6500 | - | 1105 | 38.7 |
100012 | 1300 | 38.7 | 6500 | - | 1170 | 38.7 |
100022 | 1250 | 37.2 | 6250 | - | 558 | 37.2 |
100023 | 1250 | 37.2 | 6250 | - | 620 | 37.2 |
100024 | 1250 | 37.2 | 6250 | - | 682 | 37.2 |
100025 | 1250 | 37.2 | 6250 | - | 744 | 37.2 |
100026 | 1250 | 37.2 | 6250 | - | 806 | 37.2 |
100027 | 1250 | 37.2 | 6250 | - | 868 | 37.2 |
100028 | 1250 | 37.2 | 6250 | - | 930 | 37.2 |
100029 | 1250 | 37.2 | 6250 | - | 992 | 37.2 |
100030 | 1250 | 37.2 | 6250 | - | 1054 | 37.2 |
100031 | 1250 | 37.2 | 6250 | - | 1116 | 37.2 |
100032 | 1250 | 37.2 | 6250 | - | 1178 | 37.2 |
100033 | 1250 | 37.2 | 6250 | - | 1240 | 37.2 |
100021 | 1250 | 37.2 | 6250 | 0.2 | 496 | 36.7 |
100043 | 1200 | 35.7 | 6000 | - | 540 | 35.7 |
100044 | 1200 | 35.7 | 6000 | - | 600 | 35.7 |
100045 | 1200 | 35.7 | 6000 | - | 660 | 35.7 |
100046 | 1200 | 35.7 | 6000 | - | 720 | 35.7 |
100047 | 1200 | 35.7 | 6000 | - | 780 | 35.7 |
100048 | 1200 | 35.7 | 6000 | - | 840 | 35.7 |
100049 | 1200 | 35.7 | 6000 | - | 900 | 35.7 |
100050 | 1200 | 35.7 | 6000 | - | 960 | 35.7 |
100051 | 1200 | 35.7 | 6000 | - | 1020 | 35.7 |
100052 | 1200 | 35.7 | 6000 | - | 1080 | 35.7 |
100053 | 1200 | 35.7 | 6000 | - | 1140 | 35.7 |
100054 | 1200 | 35.7 | 6000 | - | 1200 | 35.7 |
100055 | 1200 | 35.7 | 6000 | - | 1260 | 35.7 |
100065 | 1150 | 34.2 | 5750 | - | 513 | 34.2 |
100066 | 1150 | 34.2 | 5750 | - | 570 | 34.2 |
100067 | 1150 | 34.2 | 5750 | - | 627 | 34.2 |
100068 | 1150 | 34.2 | 5750 | - | 684 | 34.2 |
100069 | 1150 | 34.2 | 5750 | - | 741 | 34.2 |
100070 | 1150 | 34.2 | 5750 | - | 798 | 34.2 |
100071 | 1150 | 34.2 | 5750 | - | 855 | 34.2 |
100072 | 1150 | 34.2 | 5750 | - | 912 | 34.2 |
100073 | 1150 | 34.2 | 5750 | - | 969 | 34.2 |
100074 | 1150 | 34.2 | 5750 | - | 1026 | 34.2 |
100075 | 1150 | 34.2 | 5750 | - | 1083 | 34.2 |
100076 | 1150 | 34.2 | 5750 | - | 1140 | 34.2 |
100077 | 1150 | 34.2 | 5750 | - | 1197 | 34.2 |
100078 | 1150 | 34.2 | 5750 | - | 1254 | 34.2 |
100079 | 1150 | 34.2 | 5750 | - | 1311 | 34.2 |
100090 | 1100 | 32.7 | 5500 | - | 550 | 32.7 |
100091 | 1100 | 32.7 | 5500 | - | 605 | 32.7 |
100092 | 1100 | 32.7 | 5500 | - | 660 | 32.7 |
100093 | 1100 | 32.7 | 5500 | - | 715 | 32.7 |
100094 | 1100 | 32.7 | 5500 | - | 770 | 32.7 |
100095 | 1100 | 32.7 | 5500 | - | 825 | 32.7 |
100096 | 1100 | 32.7 | 5500 | - | 880 | 32.7 |
100097 | 1100 | 32.7 | 5500 | - | 935 | 32.7 |
100098 | 1100 | 32.7 | 5500 | - | 990 | 32.7 |
100099 | 1100 | 32.7 | 5500 | - | 1045 | 32.7 |
100100 | 1100 | 32.7 | 5500 | - | 1100 | 32.7 |
100101 | 1100 | 32.7 | 5500 | - | 1155 | 32.7 |
100102 | 1100 | 32.7 | 5500 | - | 1210 | 32.7 |
100103 | 1100 | 32.7 | 5500 | - | 1265 | 32.7 |
100104 | 1100 | 32.7 | 5500 | - | 1320 | 32.7 |
100105 | 1100 | 32.7 | 5500 | - | 1375 | 32.7 |
100042 | 1200 | 35.7 | 6000 | 1.6 | 480 | 32.5 |
100089 | 1100 | 32.7 | 5500 | 0.4 | 495 | 32.0 |
100116 | 1050 | 31.6 | 5250 | - | 520 | 31.6 |
100117 | 1050 | 31.2 | 5250 | - | 572 | 31.2 |
100118 | 1050 | 31.2 | 5250 | - | 624 | 31.2 |
100119 | 1050 | 31.2 | 5250 | - | 676 | 31.2 |
100120 | 1050 | 31.2 | 5250 | - | 728 | 31.2 |
100121 | 1050 | 31.2 | 5250 | - | 780 | 31.2 |
100122 | 1050 | 31.2 | 5250 | - | 832 | 31.2 |
100123 | 1050 | 31.2 | 5250 | - | 884 | 31.2 |
100124 | 1050 | 31.2 | 5250 | - | 936 | 31.2 |
100125 | 1050 | 31.2 | 5250 | - | 988 | 31.2 |
100126 | 1050 | 31.2 | 5250 | - | 1040 | 31.2 |
100127 | 1050 | 31.2 | 5250 | - | 1092 | 31.2 |
100128 | 1050 | 31.2 | 5250 | - | 1144 | 31.2 |
100129 | 1050 | 31.2 | 5250 | - | 1196 | 31.2 |
100130 | 1050 | 31.2 | 5250 | - | 1248 | 31.2 |
100131 | 1050 | 31.2 | 5250 | - | 1300 | 31.2 |
100132 | 1050 | 31.2 | 5250 | - | 1352 | 31.2 |
100133 | 1050 | 31.2 | 5250 | - | 1404 | 31.2 |
100144 | 1000 | 30.1 | 5000 | - | 500 | 30.1 |
100145 | 1000 | 30.1 | 5000 | - | 550 | 30.1 |
100146 | 1000 | 29.8 | 5000 | - | 600 | 29.8 |
100147 | 1000 | 29.8 | 5000 | - | 650 | 29.8 |
100148 | 1000 | 29.8 | 5000 | - | 700 | 29.8 |
100149 | 1000 | 29.8 | 5000 | - | 750 | 29.8 |
100150 | 1000 | 29.8 | 5000 | - | 800 | 29.8 |
100151 | 1000 | 29.8 | 5000 | - | 850 | 29.8 |
100152 | 1000 | 29.8 | 5000 | - | 900 | 29.8 |
100153 | 1000 | 29.8 | 5000 | - | 950 | 29.8 |
100154 | 1000 | 29.8 | 5000 | - | 1000 | 29.8 |
100155 | 1000 | 29.8 | 5000 | - | 1050 | 29.8 |
100156 | 1000 | 29.8 | 5000 | - | 1100 | 29.8 |
100157 | 1000 | 29.8 | 5000 | - | 1150 | 29.8 |
100158 | 1000 | 29.8 | 5000 | - | 1200 | 29.8 |
100159 | 1000 | 29.8 | 5000 | - | 1250 | 29.8 |
100160 | 1000 | 29.8 | 5000 | - | 1300 | 29.8 |
100161 | 1000 | 29.8 | 5000 | - | 1350 | 29.8 |
100162 | 1000 | 29.8 | 5000 | - | 1400 | 29.8 |
100163 | 1000 | 29.8 | 5000 | - | 1450 | 29.8 |
100164 | 1000 | 29.8 | 5000 | - | 1500 | 29.8 |
100176 | 950 | 28.6 | 4750 | - | 517 | 28.6 |
100177 | 950 | 28.6 | 4750 | - | 564 | 28.6 |
100178 | 950 | 28.6 | 4750 | - | 611 | 28.6 |
100179 | 950 | 28.3 | 4750 | - | 658 | 28.3 |
100180 | 950 | 28.3 | 4750 | - | 705 | 28.3 |
100181 | 950 | 28.3 | 4750 | - | 752 | 28.3 |
100182 | 950 | 28.3 | 4750 | - | 799 | 28.3 |
100183 | 950 | 28.3 | 4750 | - | 846 | 28.3 |
100184 | 950 | 28.3 | 4750 | - | 893 | 28.3 |
100185 | 950 | 28.3 | 4750 | - | 940 | 28.3 |
100186 | 950 | 28.3 | 4750 | - | 987 | 28.3 |
100187 | 950 | 28.3 | 4750 | - | 1034 | 28.3 |
100188 | 950 | 28.3 | 4750 | - | 1081 | 28.3 |
100189 | 950 | 28.3 | 4750 | - | 1128 | 28.3 |
100190 | 950 | 28.3 | 4750 | - | 1175 | 28.3 |
100191 | 950 | 28.3 | 4750 | - | 1222 | 28.3 |
100192 | 950 | 28.3 | 4750 | - | 1269 | 28.3 |
100193 | 950 | 28.3 | 4750 | - | 1316 | 28.3 |
100194 | 950 | 28.3 | 4750 | - | 1363 | 28.3 |
100195 | 950 | 28.3 | 4750 | - | 1410 | 28.3 |
100196 | 950 | 28.3 | 4750 | - | 1457 | 28.3 |
100197 | 950 | 28.3 | 4750 | - | 1504 | 28.3 |
100211 | 900 | 27.1 | 4500 | - | 540 | 27.1 |
100212 | 900 | 27.1 | 4500 | - | 585 | 27.1 |
100213 | 900 | 27.1 | 4500 | - | 630 | 27.1 |
100214 | 900 | 27.1 | 4500 | - | 675 | 27.1 |
100215 | 900 | 26.8 | 4500 | - | 720 | 26.8 |
100216 | 900 | 26.8 | 4500 | - | 765 | 26.8 |
100217 | 900 | 26.8 | 4500 | - | 810 | 26.8 |
100218 | 900 | 26.8 | 4500 | - | 855 | 26.8 |
100219 | 900 | 26.8 | 4500 | - | 900 | 26.8 |
100220 | 900 | 26.8 | 4500 | - | 945 | 26.8 |
100221 | 900 | 26.8 | 4500 | - | 990 | 26.8 |
100222 | 900 | 26.8 | 4500 | - | 1035 | 26.8 |
100223 | 900 | 26.8 | 4500 | - | 1080 | 26.8 |
100224 | 900 | 26.8 | 4500 | - | 1125 | 26.8 |
100225 | 900 | 26.8 | 4500 | - | 1170 | 26.8 |
100226 | 900 | 26.8 | 4500 | - | 1215 | 26.8 |
100227 | 900 | 26.8 | 4500 | - | 1260 | 26.8 |
100228 | 900 | 26.8 | 4500 | - | 1305 | 26.8 |
100229 | 900 | 26.8 | 4500 | - | 1350 | 26.8 |
100230 | 900 | 26.8 | 4500 | - | 1395 | 26.8 |
100231 | 900 | 26.8 | 4500 | - | 1440 | 26.8 |
100232 | 900 | 26.8 | 4500 | - | 1485 | 26.8 |
100233 | 900 | 26.8 | 4500 | - | 1530 | 26.8 |
100210 | 900 | 27.1 | 4500 | 0.4 | 495 | 26.2 |
100247 | 850 | 25.6 | 4250 | - | 504 | 25.6 |
100248 | 850 | 25.6 | 4250 | - | 546 | 25.6 |
100249 | 850 | 25.6 | 4250 | - | 588 | 25.6 |
100250 | 850 | 25.6 | 4250 | - | 630 | 25.6 |
100251 | 850 | 25.6 | 4250 | - | 672 | 25.6 |
100252 | 850 | 25.6 | 4250 | - | 714 | 25.6 |
100253 | 850 | 25.3 | 4250 | - | 756 | 25.3 |
100254 | 850 | 25.3 | 4250 | - | 798 | 25.3 |
100255 | 850 | 25.3 | 4250 | - | 840 | 25.3 |
100256 | 850 | 25.3 | 4250 | - | 882 | 25.3 |
100257 | 850 | 25.3 | 4250 | - | 924 | 25.3 |
100258 | 850 | 25.3 | 4250 | - | 966 | 25.3 |
100259 | 850 | 25.3 | 4250 | - | 1008 | 25.3 |
100260 | 850 | 25.3 | 4250 | - | 1050 | 25.3 |
100261 | 850 | 25.3 | 4250 | - | 1092 | 25.3 |
100262 | 850 | 25.3 | 4250 | - | 1134 | 25.3 |
100263 | 850 | 25.3 | 4250 | - | 1176 | 25.3 |
100264 | 850 | 25.3 | 4250 | - | 1218 | 25.3 |
100265 | 850 | 25.3 | 4250 | - | 1260 | 25.3 |
100266 | 850 | 25.3 | 4250 | - | 1302 | 25.3 |
100267 | 850 | 25.3 | 4250 | - | 1344 | 25.3 |
100268 | 850 | 25.3 | 4250 | - | 1386 | 25.3 |
100269 | 850 | 25.3 | 4250 | - | 1428 | 25.3 |
100270 | 850 | 25.3 | 4250 | - | 1470 | 25.3 |
100271 | 850 | 25.3 | 4250 | - | 1512 | 25.3 |
100288 | 800 | 24.1 | 4000 | - | 520 | 24.1 |
100289 | 800 | 24.1 | 4000 | - | 560 | 24.1 |
100290 | 800 | 24.1 | 4000 | - | 600 | 24.1 |
100291 | 800 | 24.1 | 4000 | - | 640 | 24.1 |
100292 | 800 | 24.1 | 4000 | - | 680 | 24.1 |
100293 | 800 | 24.1 | 4000 | - | 720 | 24.1 |
100294 | 800 | 24.1 | 4000 | - | 760 | 24.1 |
100295 | 800 | 23.8 | 4000 | - | 800 | 23.8 |
100296 | 800 | 23.8 | 4000 | - | 840 | 23.8 |
100297 | 800 | 23.8 | 4000 | - | 880 | 23.8 |
100298 | 800 | 23.8 | 4000 | - | 920 | 23.8 |
100299 | 800 | 23.8 | 4000 | - | 960 | 23.8 |
100300 | 800 | 23.8 | 4000 | - | 1000 | 23.8 |
100301 | 800 | 23.8 | 4000 | - | 1040 | 23.8 |
100302 | 800 | 23.8 | 4000 | - | 1080 | 23.8 |
100303 | 800 | 23.8 | 4000 | - | 1120 | 23.8 |
100304 | 800 | 23.8 | 4000 | - | 1160 | 23.8 |
100305 | 800 | 23.8 | 4000 | - | 1200 | 23.8 |
100306 | 800 | 23.8 | 4000 | - | 1240 | 23.8 |
100307 | 800 | 23.8 | 4000 | - | 1280 | 23.8 |
100308 | 800 | 23.8 | 4000 | - | 1320 | 23.8 |
100309 | 800 | 23.8 | 4000 | - | 1360 | 23.8 |
100310 | 800 | 23.8 | 4000 | - | 1400 | 23.8 |
100311 | 800 | 23.8 | 4000 | - | 1440 | 23.8 |
100312 | 800 | 23.8 | 4000 | - | 1480 | 23.8 |
100313 | 800 | 23.8 | 4000 | - | 1520 | 23.8 |
100332 | 750 | 22.6 | 3750 | - | 518 | 22.6 |
100333 | 750 | 22.6 | 3750 | - | 555 | 22.6 |
100334 | 750 | 22.6 | 3750 | - | 592 | 22.6 |
100335 | 750 | 22.6 | 3750 | - | 629 | 22.6 |
100336 | 750 | 22.6 | 3750 | - | 666 | 22.6 |
100337 | 750 | 22.6 | 3750 | - | 703 | 22.6 |
100338 | 750 | 22.6 | 3750 | - | 740 | 22.6 |
100339 | 750 | 22.6 | 3750 | - | 777 | 22.6 |
100340 | 750 | 22.6 | 3750 | - | 814 | 22.6 |
100341 | 750 | 22.3 | 3750 | - | 851 | 22.3 |
100342 | 750 | 22.3 | 3750 | - | 888 | 22.3 |
100343 | 750 | 22.3 | 3750 | - | 925 | 22.3 |
100344 | 750 | 22.3 | 3750 | - | 962 | 22.3 |
100345 | 750 | 22.3 | 3750 | - | 999 | 22.3 |
100346 | 750 | 22.3 | 3750 | - | 1036 | 22.3 |
100347 | 750 | 22.3 | 3750 | - | 1073 | 22.3 |
100348 | 750 | 22.3 | 3750 | - | 1110 | 22.3 |
100349 | 750 | 22.3 | 3750 | - | 1147 | 22.3 |
100350 | 750 | 22.3 | 3750 | - | 1184 | 22.3 |
100351 | 750 | 22.3 | 3750 | - | 1221 | 22.3 |
100352 | 750 | 22.3 | 3750 | - | 1258 | 22.3 |
100353 | 750 | 22.3 | 3750 | - | 1295 | 22.3 |
100354 | 750 | 22.3 | 3750 | - | 1332 | 22.3 |
100355 | 750 | 22.3 | 3750 | - | 1369 | 22.3 |
100356 | 750 | 22.3 | 3750 | - | 1406 | 22.3 |
100357 | 750 | 22.3 | 3750 | - | 1443 | 22.3 |
100358 | 750 | 22.3 | 3750 | - | 1480 | 22.3 |
100359 | 750 | 22.3 | 3750 | - | 1517 | 22.3 |
100115 | 1050 | 28.2 | 5250 | 3.0 | 468 | 22.3 |
100001 | 1300 | 28.0 | 6500 | 3.4 | 455 | 21.2 |
100381 | 700 | 21.1 | 3500 | - | 525 | 21.1 |
100382 | 700 | 21.1 | 3500 | - | 560 | 21.1 |
100383 | 700 | 21.1 | 3500 | - | 595 | 21.1 |
100384 | 700 | 21.1 | 3500 | - | 630 | 21.1 |
100385 | 700 | 21.1 | 3500 | - | 665 | 21.1 |
100386 | 700 | 21.1 | 3500 | - | 700 | 21.1 |
100387 | 700 | 21.1 | 3500 | - | 735 | 21.1 |
100388 | 700 | 21.1 | 3500 | - | 770 | 21.1 |
100389 | 700 | 21.1 | 3500 | - | 805 | 21.1 |
100390 | 700 | 21.1 | 3500 | - | 840 | 21.1 |
100391 | 700 | 21.1 | 3500 | - | 875 | 21.1 |
100392 | 700 | 20.8 | 3500 | - | 910 | 20.8 |
100393 | 700 | 20.8 | 3500 | - | 945 | 20.8 |
100394 | 700 | 20.8 | 3500 | - | 980 | 20.8 |
100395 | 700 | 20.8 | 3500 | - | 1015 | 20.8 |
100396 | 700 | 20.8 | 3500 | - | 1050 | 20.8 |
100397 | 700 | 20.8 | 3500 | - | 1085 | 20.8 |
100398 | 700 | 20.8 | 3500 | - | 1120 | 20.8 |
100399 | 700 | 20.8 | 3500 | - | 1155 | 20.8 |
100400 | 700 | 20.8 | 3500 | - | 1190 | 20.8 |
100401 | 700 | 20.8 | 3500 | - | 1225 | 20.8 |
100402 | 700 | 20.8 | 3500 | - | 1260 | 20.8 |
100403 | 700 | 20.8 | 3500 | - | 1295 | 20.8 |
100404 | 700 | 20.8 | 3500 | - | 1330 | 20.8 |
100405 | 700 | 20.8 | 3500 | - | 1365 | 20.8 |
100406 | 700 | 20.8 | 3500 | - | 1400 | 20.8 |
100407 | 700 | 20.8 | 3500 | - | 1435 | 20.8 |
100408 | 700 | 20.8 | 3500 | - | 1470 | 20.8 |
100409 | 700 | 20.8 | 3500 | - | 1505 | 20.8 |
100434 | 650 | 20.2 | 3250 | - | 512 | 20.2 |
100175 | 950 | 26.2 | 4750 | 3.1 | 470 | 20.1 |
100435 | 650 | 19.6 | 3250 | - | 544 | 19.6 |
100436 | 650 | 19.6 | 3250 | - | 576 | 19.6 |
100437 | 650 | 19.6 | 3250 | - | 608 | 19.6 |
100438 | 650 | 19.6 | 3250 | - | 640 | 19.6 |
100439 | 650 | 19.6 | 3250 | - | 672 | 19.6 |
100440 | 650 | 19.6 | 3250 | - | 704 | 19.6 |
100441 | 650 | 19.6 | 3250 | - | 736 | 19.6 |
100442 | 650 | 19.6 | 3250 | - | 768 | 19.6 |
100443 | 650 | 19.6 | 3250 | - | 800 | 19.6 |
100444 | 650 | 19.6 | 3250 | - | 832 | 19.6 |
100445 | 650 | 19.6 | 3250 | - | 864 | 19.6 |
100446 | 650 | 19.6 | 3250 | - | 896 | 19.6 |
100447 | 650 | 19.6 | 3250 | - | 928 | 19.6 |
100287 | 800 | 24.1 | 4000 | 2.4 | 480 | 19.3 |
100448 | 650 | 19.3 | 3250 | - | 960 | 19.3 |
100449 | 650 | 19.3 | 3250 | - | 992 | 19.3 |
100450 | 650 | 19.3 | 3250 | - | 1024 | 19.3 |
100451 | 650 | 19.3 | 3250 | - | 1056 | 19.3 |
100452 | 650 | 19.3 | 3250 | - | 1088 | 19.3 |
100453 | 650 | 19.3 | 3250 | - | 1120 | 19.3 |
100454 | 650 | 19.3 | 3250 | - | 1152 | 19.3 |
100455 | 650 | 19.3 | 3250 | - | 1184 | 19.3 |
100456 | 650 | 19.3 | 3250 | - | 1216 | 19.3 |
100457 | 650 | 19.3 | 3250 | - | 1248 | 19.3 |
100458 | 650 | 19.3 | 3250 | - | 1280 | 19.3 |
100459 | 650 | 19.3 | 3250 | - | 1312 | 19.3 |
100460 | 650 | 19.3 | 3250 | - | 1344 | 19.3 |
100461 | 650 | 19.3 | 3250 | - | 1376 | 19.3 |
100462 | 650 | 19.3 | 3250 | - | 1408 | 19.3 |
100463 | 650 | 19.3 | 3250 | - | 1440 | 19.3 |
100464 | 650 | 19.3 | 3250 | - | 1472 | 19.3 |
100465 | 650 | 19.3 | 3250 | - | 1504 | 19.3 |
100466 | 650 | 19.3 | 3250 | - | 1536 | 19.3 |
100493 | 600 | 18.6 | 3000 | - | 510 | 18.6 |
100494 | 600 | 18.6 | 3000 | - | 540 | 18.6 |
100380 | 700 | 21.1 | 3500 | 1.3 | 490 | 18.5 |
100495 | 600 | 18.1 | 3000 | - | 570 | 18.1 |
100496 | 600 | 18.1 | 3000 | - | 600 | 18.1 |
100497 | 600 | 18.1 | 3000 | - | 630 | 18.1 |
100498 | 600 | 18.1 | 3000 | - | 660 | 18.1 |
100499 | 600 | 18.1 | 3000 | - | 690 | 18.1 |
100500 | 600 | 18.1 | 3000 | - | 720 | 18.1 |
100501 | 600 | 18.1 | 3000 | - | 750 | 18.1 |
100502 | 600 | 18.1 | 3000 | - | 780 | 18.1 |
100503 | 600 | 18.1 | 3000 | - | 810 | 18.1 |
100504 | 600 | 18.1 | 3000 | - | 840 | 18.1 |
100505 | 600 | 18.1 | 3000 | - | 870 | 18.1 |
100506 | 600 | 18.1 | 3000 | - | 900 | 18.1 |
100507 | 600 | 18.1 | 3000 | - | 930 | 18.1 |
100508 | 600 | 18.1 | 3000 | - | 960 | 18.1 |
100509 | 600 | 18.1 | 3000 | - | 990 | 18.1 |
100510 | 600 | 17.9 | 3000 | - | 1020 | 17.9 |
100511 | 600 | 17.9 | 3000 | - | 1050 | 17.9 |
100512 | 600 | 17.9 | 3000 | - | 1080 | 17.9 |
100513 | 600 | 17.9 | 3000 | - | 1110 | 17.9 |
100514 | 600 | 17.9 | 3000 | - | 1140 | 17.9 |
100515 | 600 | 17.9 | 3000 | - | 1170 | 17.9 |
100516 | 600 | 17.9 | 3000 | - | 1200 | 17.9 |
100517 | 600 | 17.9 | 3000 | - | 1230 | 17.9 |
100518 | 600 | 17.9 | 3000 | - | 1260 | 17.9 |
100519 | 600 | 17.9 | 3000 | - | 1290 | 17.9 |
100520 | 600 | 17.9 | 3000 | - | 1320 | 17.9 |
100521 | 600 | 17.9 | 3000 | - | 1350 | 17.9 |
100522 | 600 | 17.9 | 3000 | - | 1380 | 17.9 |
100523 | 600 | 17.9 | 3000 | - | 1410 | 17.9 |
100524 | 600 | 17.9 | 3000 | - | 1440 | 17.9 |
100525 | 600 | 17.9 | 3000 | - | 1470 | 17.9 |
100526 | 600 | 17.9 | 3000 | - | 1500 | 17.9 |
100527 | 600 | 17.9 | 3000 | - | 1530 | 17.9 |
100331 | 750 | 22.6 | 3750 | 2.4 | 481 | 17.8 |
100559 | 550 | 17.1 | 2750 | - | 513 | 17.1 |
100560 | 550 | 17.1 | 2750 | - | 540 | 17.1 |
100561 | 550 | 17.1 | 2750 | - | 567 | 17.1 |
100562 | 550 | 17.1 | 2750 | - | 594 | 17.1 |
100563 | 550 | 16.6 | 2750 | - | 621 | 16.6 |
100564 | 550 | 16.6 | 2750 | - | 648 | 16.6 |
100565 | 550 | 16.6 | 2750 | - | 675 | 16.6 |
100566 | 550 | 16.6 | 2750 | - | 702 | 16.6 |
100567 | 550 | 16.6 | 2750 | - | 729 | 16.6 |
100568 | 550 | 16.6 | 2750 | - | 756 | 16.6 |
100569 | 550 | 16.6 | 2750 | - | 783 | 16.6 |
100570 | 550 | 16.6 | 2750 | - | 810 | 16.6 |
100571 | 550 | 16.6 | 2750 | - | 837 | 16.6 |
100572 | 550 | 16.6 | 2750 | - | 864 | 16.6 |
100573 | 550 | 16.6 | 2750 | - | 891 | 16.6 |
100574 | 550 | 16.6 | 2750 | - | 918 | 16.6 |
100575 | 550 | 16.6 | 2750 | - | 945 | 16.6 |
100576 | 550 | 16.6 | 2750 | - | 972 | 16.6 |
100577 | 550 | 16.6 | 2750 | - | 999 | 16.6 |
100578 | 550 | 16.6 | 2750 | - | 1026 | 16.6 |
100579 | 550 | 16.4 | 2750 | - | 1053 | 16.4 |
100580 | 550 | 16.4 | 2750 | - | 1080 | 16.4 |
100581 | 550 | 16.4 | 2750 | - | 1107 | 16.4 |
100582 | 550 | 16.4 | 2750 | - | 1134 | 16.4 |
100583 | 550 | 16.4 | 2750 | - | 1161 | 16.4 |
100584 | 550 | 16.4 | 2750 | - | 1188 | 16.4 |
100585 | 550 | 16.4 | 2750 | - | 1215 | 16.4 |
100586 | 550 | 16.4 | 2750 | - | 1242 | 16.4 |
100587 | 550 | 16.4 | 2750 | - | 1269 | 16.4 |
100588 | 550 | 16.4 | 2750 | - | 1296 | 16.4 |
100589 | 550 | 16.4 | 2750 | - | 1323 | 16.4 |
100590 | 550 | 16.4 | 2750 | - | 1350 | 16.4 |
100591 | 550 | 16.4 | 2750 | - | 1377 | 16.4 |
100592 | 550 | 16.4 | 2750 | - | 1404 | 16.4 |
100593 | 550 | 16.4 | 2750 | - | 1431 | 16.4 |
100594 | 550 | 16.4 | 2750 | - | 1458 | 16.4 |
100595 | 550 | 16.4 | 2750 | - | 1485 | 16.4 |
100596 | 550 | 16.4 | 2750 | - | 1512 | 16.4 |
100633 | 500 | 15.5 | 2500 | - | 500 | 15.5 |
100634 | 500 | 15.5 | 2500 | - | 525 | 15.5 |
100635 | 500 | 15.5 | 2500 | - | 550 | 15.5 |
100636 | 500 | 15.5 | 2500 | - | 575 | 15.5 |
100637 | 500 | 15.5 | 2500 | - | 600 | 15.5 |
100638 | 500 | 15.5 | 2500 | - | 625 | 15.5 |
100639 | 500 | 15.5 | 2500 | - | 650 | 15.5 |
100640 | 500 | 15.1 | 2500 | - | 675 | 15.1 |
100641 | 500 | 15.1 | 2500 | - | 700 | 15.1 |
100642 | 500 | 15.1 | 2500 | - | 725 | 15.1 |
100643 | 500 | 15.1 | 2500 | - | 750 | 15.1 |
100644 | 500 | 15.1 | 2500 | - | 775 | 15.1 |
100645 | 500 | 15.1 | 2500 | - | 800 | 15.1 |
100646 | 500 | 15.1 | 2500 | - | 825 | 15.1 |
100647 | 500 | 15.1 | 2500 | - | 850 | 15.1 |
100648 | 500 | 15.1 | 2500 | - | 875 | 15.1 |
100649 | 500 | 15.1 | 2500 | - | 900 | 15.1 |
100650 | 500 | 15.1 | 2500 | - | 925 | 15.1 |
100651 | 500 | 15.1 | 2500 | - | 950 | 15.1 |
100652 | 500 | 15.1 | 2500 | - | 975 | 15.1 |
100653 | 500 | 15.1 | 2500 | - | 1000 | 15.1 |
100654 | 500 | 15.1 | 2500 | - | 1025 | 15.1 |
100655 | 500 | 15.1 | 2500 | - | 1050 | 15.1 |
100656 | 500 | 15.1 | 2500 | - | 1075 | 15.1 |
100657 | 500 | 14.9 | 2500 | - | 1100 | 14.9 |
100658 | 500 | 14.9 | 2500 | - | 1125 | 14.9 |
100659 | 500 | 14.9 | 2500 | - | 1150 | 14.9 |
100660 | 500 | 14.9 | 2500 | - | 1175 | 14.9 |
100661 | 500 | 14.9 | 2500 | - | 1200 | 14.9 |
100662 | 500 | 14.9 | 2500 | - | 1225 | 14.9 |
100663 | 500 | 14.9 | 2500 | - | 1250 | 14.9 |
100664 | 500 | 14.9 | 2500 | - | 1275 | 14.9 |
100665 | 500 | 14.9 | 2500 | - | 1300 | 14.9 |
100666 | 500 | 14.9 | 2500 | - | 1325 | 14.9 |
100667 | 500 | 14.9 | 2500 | - | 1350 | 14.9 |
100668 | 500 | 14.9 | 2500 | - | 1375 | 14.9 |
100669 | 500 | 14.9 | 2500 | - | 1400 | 14.9 |
100670 | 500 | 14.9 | 2500 | - | 1425 | 14.9 |
100671 | 500 | 14.9 | 2500 | - | 1450 | 14.9 |
100672 | 500 | 14.9 | 2500 | - | 1475 | 14.9 |
100673 | 500 | 14.9 | 2500 | - | 1500 | 14.9 |
100674 | 500 | 14.9 | 2500 | - | 1525 | 14.9 |
100433 | 650 | 20.1 | 3250 | 2.9 | 480 | 14.2 |
100558 | 550 | 17.1 | 2750 | 2.4 | 486 | 12.4 |
100492 | 600 | 18.5 | 3000 | 3.2 | 480 | 12.2 |
100143 | 1000 | 19.5 | 5000 | 4.9 | 450 | 9.7 |
Overall score = score_ratio - 2 * repetitive DNA content
Redundant probes
Putative probe ID | Length | Score ratio | Actual | %rep DNA | Distance | Overall |
---|---|---|---|---|---|---|
100064 | 1150 | 25.3 | 5750 | 3.7 | 456 | 17.9 |
100246 | 850 | 21.6 | 4250 | 4.4 | 462 | 12.9 |
100632 | 500 | 14.8 | 2500 | 4.8 | 475 | 5.2 |
Overall score = score_ratio - 2 * repetitive DNA content