G2C::Proteomics

Targeted tandem affinity purification of PSD-95 recovers core
postsynaptic complexes and schizophrenia susceptibility proteins
Esperanza Fernandez, Mark O Collins, Rachel T Uren, Maksym V Kopanitsa, Noboru H Komiyama,
Mike DR Croning, Lysimachos Zografos, J Douglas Armstrong, Jyoti S Choudhary and Seth GN Grant


Supplementary Table 4. EmPAI values from single step and tandem purifications.

EmPAI values for each protein present in both single step and tandem purifications were normalised to the total protein emPAI in each set and then normalised to the emPAI value of the bait protein (PSD-95).

UniProt AccMGI SymbolNormalised emPAI (single step) x 100Normalised emPAI (tandem) x 100Ratio emPAI (tandem/single step)
Q9R1V6Adam22
0.13
0.45
3.45
Q6PFD5Dlgap3
0.09
0.21
2.33
Q03391Grin2d
0.06
0.11
2.05
Q9Z2W9Gria3
0.12
0.24
1.96
Q8R0S2Iqsec1
0.08
0.16
1.94
Q5DU25Iqsec2
0.22
0.41
1.90
Q8BZM2Anks1b
0.32
0.55
1.72
Q7TNS5B630019K06Rik
0.43
0.73
1.70
Q3UXZ6Fam81a
0.31
0.53
1.70
P16388Kcna1
0.15
0.26
1.68
P23819Gria2
0.14
0.22
1.58
Q3UP61Dlg1
0.79
1.18
1.49
P35436Grin2a
0.36
0.53
1.47
Q9Z307Kcnj16
0.24
0.35
1.45
Q01097Grin2b
0.90
1.20
1.33
P15105Glul
0.77
1.03
1.33
Q9WV31Arc
0.81
1.04
1.28
P62482Kcnab2
0.37
0.47
1.25
O88343Slc4a4
0.08
0.10
1.25
Q8BJ42Dlgap2
0.30
0.37
1.25
Q91XM9Dlg2
2.36
2.85
1.21
P63141Kcna2
0.29
0.33
1.11
P60202Plp1
0.44
0.48
1.08
Q60931Vdac3
0.42
0.45
1.08
Q9CZY3Ube2v1
0.32
0.34
1.06
Q62108Dlg4
3.30
3.30
1.00
Q9JIA1Lgi1
0.46
0.46
0.99
Q9QUH6Syngap1
0.40
0.40
0.98
P35486Pdha1
0.20
0.19
0.97
Q9R0P5Dstn
0.40
0.38
0.95
A2AI21Grin1
1.19
1.06
0.89
O54983Crym
0.29
0.25
0.88
Q61990Pcbp2
0.20
0.17
0.87
P62908Rps3
0.18
0.15
0.87
Q9D415Dlgap1
0.35
0.30
0.85
P46096Syt1
0.14
0.11
0.78
O89112Lancl1
0.24
0.19
0.77
Q52KF7Dlg3
0.67
0.49
0.74
P60335Pcbp1
0.29
0.21
0.70
P18872Gnao1
0.94
0.63
0.67
Q64332Syn2
0.21
0.14
0.66
P16858Gapdh
0.88
0.58
0.65
Q91VR2Atp5c1
0.32
0.20
0.63
Q91V61Sfxn3
0.27
0.16
0.61
Q8BKX1Baiap2
0.76
0.45
0.59
P11798Camk2a
0.51
0.30
0.58
P62874Gnb1
0.32
0.18
0.56
P70441Slc9a3r1
0.28
0.16
0.56
P56564Slc1a3
0.24
0.14
0.56
P61264Stx1b
0.29
0.16
0.56
Q9R111Gda
2.88
1.60
0.55
Q5SVI3Camk2b
0.49
0.27
0.54
P63085Mapk1
0.39
0.21
0.53
B1AZP2Dlgap4
0.42
0.21
0.51
Q9D051Pdhb
0.54
0.27
0.49
Q8QZT1Acat1
0.21
0.11
0.49
Q922F4Tubb6
1.15
0.55
0.47
P43006Slc1a2
0.26
0.12
0.45
P52480Pkm2
0.59
0.26
0.45
Q60930Vdac2
0.45
0.20
0.45
O08599Stxbp1
0.22
0.10
0.44
Q9JM63Kcnj10
0.65
0.28
0.43
P16330Cnp
0.75
0.31
0.41
P51863Atp6v0d1
0.40
0.17
0.41
A2A817Park7
2.10
0.79
0.37
Q8K0U4Hspa12a
0.12
0.04
0.37
P47754Capza2
0.30
0.11
0.36
Q91V12Acot7
0.45
0.16
0.35
Q61553Fscn1
0.21
0.07
0.32
P08551Nefl
0.30
0.09
0.31
P09411Pgk1
0.77
0.23
0.31
P63328Ppp3ca
1.10
0.33
0.30
Q60932Vdac1
0.99
0.25
0.25
P48453Ppp3cb
0.60
0.14
0.23
Q6GQW0Btbd11
0.27
0.06
0.22
P10126Eef1a1
0.41
0.09
0.21
Q99KI0Aco2
0.29
0.06
0.20
P46460Nsf
0.61
0.12
0.19
Q5SXR6Cltc
0.47
0.09
0.19
P51881Slc25a5
0.73
0.13
0.18
P48962Slc25a4
0.85
0.15
0.18
P14094Atp1b1
1.29
0.22
0.17
Q05CJ5Atp2b1
1.30
0.23
0.17